Detailed information NTG0411980

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: GKS41_RS02975
• Genome accession: NZ_CP047268
• Coordinates: 578529..580964 (+)
• Length: 811 a.a.
• NCBI ID: WP_159353705.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain DH8043
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 573529..585964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GKS41_RS02960	ctsR	576406..576870 (+)	465	WP_003156396.1	transcriptional regulator CtsR	-
GKS41_RS02965	-	576884..577441 (+)	558	WP_003156397.1	UvrB/UvrC motif-containing protein	-
GKS41_RS02970	-	577441..578532 (+)	1092	WP_159353704.1	protein arginine kinase	-
GKS41_RS02975	clpC	578529..580964 (+)	2436	WP_159353705.1	ATP-dependent protease ATP-binding subunit ClpC	Regulator
GKS41_RS02980	radA	581058..582437 (+)	1380	WP_014416742.1	DNA repair protein RadA	Machinery gene
GKS41_RS02985	disA	582441..583523 (+)	1083	WP_003156401.1	DNA integrity scanning diadenylate cyclase DisA	-
GKS41_RS02990	-	583636..584736 (+)	1101	WP_003156403.1	PIN/TRAM domain-containing protein	-
GKS41_RS02995	ispD	584749..585447 (+)	699	WP_003156405.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GKS41_RS03000	ispF	585440..585916 (+)	477	WP_003156407.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 811 a.a.
• Molecular weight: 90142.53 Da
• Isoelectric Point: 5.6738

>NTDB_id=411980 GKS41_RS02975 WP_159353705.1 578529..580964(+) (clpC) [Bacillus velezensis strain DH8043]
MMFGRFTERAQKVLALAQEEALRLGDTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN

Nucleotide

• Length: 2436 bp

>NTDB_id=411980 GKS41_RS02975 WP_159353705.1 578529..580964(+) (clpC) [Bacillus velezensis strain DH8043]
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCGATAC
AAATATCGGAACTGAACATATACTATTAGGGTTAGTCCGTGAAGGCGAAGGGATCGCATTTAAAGCTTTAGAGGCGCTTG
GCCTTAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATCGGTCGAGGGCAGGAAAGCACCACCTCTGTTCCTCAT
TACACACCTCGAGCCAAAAAGGTAATAGAGTTATCAATGGATGAAGCCAGAAAGCTAGGACATTCTTATGTGGGAACAGA
ACACATACTTCTCGGACTGATTCGTGAAGGAGAAGGCGTGGCGGCGAGAGTTCTGAATAATCTCGGTGTCAGCTTGAATA
AGGCGAGACAGCAGGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGATCTTCTGCATCCGGTACGAACAGCAATGCAAAC
ACGCCGACGCTGGACAGTCTGGCGCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACGAAAAATAATCCCGTTCTTATCGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCTGAAGGCCTCGCACAGCAGATCATCAATAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACGTTAGACATGGGTACGGTTGTAGCCGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTG
CGATTGACGCATCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTTCAATGCATCGGTGCCACAACGCTTGATGAA
TACCGTAAATATATCGAAAAAGACGCGGCTCTCGAGCGCCGTTTCCAGCCGATTCAGGTGGATCAGCCGTCAGCCGATGA
AAGCATTCAAATTTTAAAAGGGCTCCGTGACCGGTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CGGCGGTTAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACCCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAGAGCCAGGAGTTTGAAAAAGCGGCTTCCCTTCGTGATACAGAGCAGCGCCTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATCGCGATGGTT
GTATCCAGCTGGACCGGGGTTCCCGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCATTCCCGCGTCATCGGCCAGGATGAAGCCGTTGTAGCCGTTGCAAAGGCTGTCAGACGTGCAAGAGCCGGACTGAAGG
ACCCGAAACGTCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACACTCGACTTCACGCCT
TGTCGGTTCTCCTCCCGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTATTGCTTGATGAAATTGAAAAAGCGCACCCTGATGTGTTTAACATTCTCCTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGGGCGAGCGAGCTGAA
GCGCAACAAATATGTGGGCTTCAATGTCCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGC
TGCAAAAGCAAAAGTAGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAACTCCTCAGAGGCAATATTGATAAAGGCCAGCACATTGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (344-445)

• AAA domain (Cdc48 subfamily) (AAA_2) (537-709)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (715-794)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-144)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-69)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	96.794	100	0.968
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.688	98.767	0.491
clpC	Streptococcus thermophilus LMD-9	46.359	100	0.471
clpC	Streptococcus thermophilus LMG 18311	46.117	100	0.469
clpC	Streptococcus mutans UA159	44.203	100	0.451
clpC	Streptococcus pneumoniae D39	45.018	100	0.451
clpC	Streptococcus pneumoniae Rx1	45.018	100	0.451
clpC	Streptococcus pneumoniae TIGR4	44.772	100	0.449
clpE	Streptococcus mutans UA159	53.313	80.025	0.427
clpC	Lactococcus lactis subsp. cremoris KW2	49.709	84.834	0.422
clpE	Streptococcus pneumoniae TIGR4	52.388	80.025	0.419
clpE	Streptococcus pneumoniae Rx1	52.388	80.025	0.419
clpE	Streptococcus pneumoniae D39	52.388	80.025	0.419
clpE	Streptococcus pneumoniae R6	52.388	80.025	0.419