Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N026_RS07900 Genome accession   NZ_CP047267
Coordinates   1689315..1690031 (+) Length   238 a.a.
NCBI ID   WP_011267143.1    Uniprot ID   A0AAJ4E3K1
Organism   Pseudomonas syringae UB303     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1684315..1695031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N026_RS07880 (N026_07880) - 1684395..1685018 (+) 624 WP_024660971.1 glutathione S-transferase -
  N026_RS07885 (N026_07885) - 1685202..1686134 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  N026_RS07890 (N026_07890) - 1686131..1686919 (+) 789 WP_003421319.1 ABC transporter permease -
  N026_RS07895 (N026_07895) comA 1687056..1689272 (+) 2217 WP_024660972.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N026_RS07900 (N026_07900) exbB 1689315..1690031 (+) 717 WP_011267143.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N026_RS07905 (N026_07905) - 1690028..1690459 (+) 432 WP_024660973.1 ExbD/TolR family protein -
  N026_RS07910 (N026_07910) lpxK 1690459..1691454 (+) 996 WP_024660974.1 tetraacyldisaccharide 4'-kinase -
  N026_RS07915 (N026_07915) - 1691472..1691657 (+) 186 WP_002552679.1 Trm112 family protein -
  N026_RS07920 (N026_07920) kdsB 1691654..1692418 (+) 765 WP_024639315.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N026_RS07925 (N026_07925) murB 1692453..1693472 (+) 1020 WP_024642747.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.33 Da        Isoelectric Point: 7.3261

>NTDB_id=411958 N026_RS07900 WP_011267143.1 1689315..1690031(+) (exbB) [Pseudomonas syringae UB303]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEQKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=411958 N026_RS07900 WP_011267143.1 1689315..1690031(+) (exbB) [Pseudomonas syringae UB303]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAACAGAAGCTGGACAGCGAAAAGCTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGGCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAACTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGTTGCTTG
GTTTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGCTCCGGGGCCACCGCCAATGCCGGTGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACCGCGTCGGGTCTTATCGTAGCGATCCCGGCGATTTTCTTTCATCG
CTTTCTGCAGAGCCGCGTCGATGAGCTGGTAGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.095

88.235

0.689

Multiple sequence alignment