Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N026_RS07895 Genome accession   NZ_CP047267
Coordinates   1687056..1689272 (+) Length   738 a.a.
NCBI ID   WP_024660972.1    Uniprot ID   A0AAJ4E3E4
Organism   Pseudomonas syringae UB303     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1682056..1694272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N026_RS07880 (N026_07880) - 1684395..1685018 (+) 624 WP_024660971.1 glutathione S-transferase -
  N026_RS07885 (N026_07885) - 1685202..1686134 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  N026_RS07890 (N026_07890) - 1686131..1686919 (+) 789 WP_003421319.1 ABC transporter permease -
  N026_RS07895 (N026_07895) comA 1687056..1689272 (+) 2217 WP_024660972.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N026_RS07900 (N026_07900) exbB 1689315..1690031 (+) 717 WP_011267143.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N026_RS07905 (N026_07905) - 1690028..1690459 (+) 432 WP_024660973.1 ExbD/TolR family protein -
  N026_RS07910 (N026_07910) lpxK 1690459..1691454 (+) 996 WP_024660974.1 tetraacyldisaccharide 4'-kinase -
  N026_RS07915 (N026_07915) - 1691472..1691657 (+) 186 WP_002552679.1 Trm112 family protein -
  N026_RS07920 (N026_07920) kdsB 1691654..1692418 (+) 765 WP_024639315.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N026_RS07925 (N026_07925) murB 1692453..1693472 (+) 1020 WP_024642747.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80303.45 Da        Isoelectric Point: 10.4723

>NTDB_id=411957 N026_RS07895 WP_024660972.1 1687056..1689272(+) (comA) [Pseudomonas syringae UB303]
MRTGMIALALGLLALRFLPALPPAWLLLLMPILALMLLPFRTYPLAFFLLGFTWACVSAQWALSDRLAQRLDGQTLWVQG
KVVGLPSVAEGVVRFELEDAWSRRARLPARIRVAWYGGQPVNSGERWRMAIKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQRLAPARAAWRDAIRQRLLTVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPSACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWSWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQGLFVFLGAVAAALPAWLPSAVPVWAWWLSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVARVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDARGERLLLAGDIDVHAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=411957 N026_RS07895 WP_024660972.1 1687056..1689272(+) (comA) [Pseudomonas syringae UB303]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCCCTGCCGCCGGCCTGGCTTCT
GCTGCTGATGCCGATACTGGCGTTGATGTTGCTGCCGTTCCGTACCTATCCGCTGGCGTTCTTTCTGCTCGGTTTCACCT
GGGCCTGCGTTTCGGCGCAGTGGGCATTGAGTGACCGCTTGGCGCAGCGTCTCGATGGTCAGACGCTGTGGGTGCAGGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGCTTTGAACTGGAAGATGCCTGGTCACGACGTGCCAGGCT
GCCGGCGCGAATCCGCGTGGCGTGGTACGGCGGCCAGCCCGTGAACAGCGGCGAGCGCTGGCGCATGGCGATCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCGGATGCTTTCGACTATGAAGCCTGGCTACTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTAGTGGATGGTCAGCGGTTGGCACCTGCGCGTGCCGCCTGGCGCGATGCCATTCGTCAGCGTCTGCTGACGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCGGCGCTGGTGCTGGGCGATGGCTCAGGGCTGTCGAGCACCGACTGGCAGGTGT
TGCAGGATACTGGCACTGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGCGTGATCTACGCGCTG
GTCGCAGGCCTGGCGCGCTGGGGGCTGTGGCCACGCTTTTTGCCCTGGCTGCCGTCGGCGTGTGCACTGGCGTTCAGTGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTCCGGCGAGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGTCACCTGGGCGTGGTCTGGCCTTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGATCCTGATTTTCAGCGGGCGTCTTGGCGC
CTGGAGCTGGTGGCAAAGCTGGACACGGGCGCAATGGCTGATCGCCGTTGGCTTGTTGCCGATCCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTGCTTGCGGTGCCTTGGGTCAGCGTGATTGTCCTGCCGCCGGCATTG
CTCGGAACGCTGTTGCTGCCAGTCCCCGTGGTCGGGGAAGGTCTGCTCTGGCTGGCGGGCGGGGCGCTGCAGGGGCTGTT
CGTATTCCTCGGCGCGGTGGCCGCCGCATTGCCGGCCTGGTTGCCCAGTGCCGTGCCGGTCTGGGCATGGTGGTTGAGTC
TGCTCGGGGCCTTGCTCCTGTTGCTGCCCAAGGGCGTGCCCATGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGTCAGGTCGATGTGTTGCAGCTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGTACTCGCAATCACACACTCCTGTATGACGCAGGTCCACGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCGGGTGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGAGGTGCA
GCAGCGGTTCATCAGGCCTTTCCGGTGGCTCGCGTGCTAGGCGGTGAGCTGGCCCGCCTCGCGCCGCAACTCGACGCCCG
ACTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ATCCGGCCTCCTGCATCCTCAGCGTCGACGCCAGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGCACGCCGAG
CGTGCGGCGATCGACAGCGGGTTCGACCTTCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGTACCTCGTCGTC
CAAAGCATTTCTGCGCGCCGTGGCACCGGTTGGCGTGCTGATTTCCCGTGGTCGCAACAACGCGTTCGGTCACCCGCATC
CGTTGGTCATGGCGCGCTATCGAGGCCTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCGGTCCGTCTGCAACTG
GGGACATTCGGAACGCCACAGGCCGAGCGCGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.57

97.019

0.607
  comA Ralstonia pseudosolanacearum GMI1000

34.675

100

0.397

Multiple sequence alignment