Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   H4991_RS04645 Genome accession   NZ_CP059968
Coordinates   893370..894236 (+) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C197     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 888370..899236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4991_RS04610 (H4991_04610) - 888717..890111 (+) 1395 WP_057044127.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H4991_RS04615 (H4991_04615) tsaD 890108..891115 (+) 1008 WP_057044126.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H4991_RS04620 (H4991_04620) ctsG 891116..891631 (+) 516 WP_057044125.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4991_RS04625 (H4991_04625) - 891631..891978 (+) 348 Protein_899 DUF2920 family protein -
  H4991_RS04630 (H4991_04630) - 891986..892183 (-) 198 Protein_900 ribonuclease Y -
  H4991_RS04635 (H4991_04635) - 892104..892730 (-) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  H4991_RS04640 (H4991_04640) - 892813..893370 (+) 558 WP_002859285.1 TlpA disulfide reductase family protein -
  H4991_RS04645 (H4991_04645) pilA 893370..894236 (+) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  H4991_RS04650 (H4991_04650) radA 894236..895576 (+) 1341 WP_002860437.1 DNA repair protein RadA Machinery gene
  H4991_RS04655 (H4991_04655) atpB 895645..896325 (+) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  H4991_RS04660 (H4991_04660) - 896322..896513 (+) 192 WP_002852856.1 membrane protein -
  H4991_RS04665 (H4991_04665) metF 896535..897383 (-) 849 WP_002860436.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=411956 H4991_RS04645 WP_002852840.1 893370..894236(+) (pilA) [Campylobacter jejuni strain C197]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=411956 H4991_RS04645 WP_002852840.1 893370..894236(+) (pilA) [Campylobacter jejuni strain C197]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434