Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H4992_RS04105 Genome accession   NZ_CP059967
Coordinates   758939..759490 (+) Length   183 a.a.
NCBI ID   WP_002865738.1    Uniprot ID   O69302
Organism   Campylobacter jejuni strain C201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 753939..764490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4992_RS04070 (H4992_04070) - 754157..754582 (+) 426 WP_002868640.1 GNAT family N-acetyltransferase -
  H4992_RS04075 (H4992_04075) - 754646..755266 (+) 621 WP_052800209.1 NAD(P)H-dependent oxidoreductase -
  H4992_RS04080 (H4992_04080) rdxA 755235..755843 (+) 609 WP_182577169.1 nitroreductase family protein -
  H4992_RS04085 (H4992_04085) pgsA 755968..756504 (+) 537 WP_182577170.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H4992_RS04090 (H4992_04090) rseP 756501..757607 (+) 1107 WP_070265004.1 RIP metalloprotease RseP -
  H4992_RS04095 (H4992_04095) - 757600..758466 (+) 867 WP_182577171.1 VirK family antimicrobial peptide resistance protein -
  H4992_RS04100 (H4992_04100) rpsF 758553..758930 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  H4992_RS04105 (H4992_04105) ssb 758939..759490 (+) 552 WP_002865738.1 single-stranded DNA-binding protein Machinery gene
  H4992_RS04110 (H4992_04110) rpsR 759501..759761 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  H4992_RS04115 (H4992_04115) lon 759822..762197 (-) 2376 WP_002868636.1 endopeptidase La -
  H4992_RS04120 (H4992_04120) - 762214..762861 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  H4992_RS04125 (H4992_04125) fliW 763022..763411 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  H4992_RS04130 (H4992_04130) proC 763411..764142 (+) 732 WP_002868635.1 pyrroline-5-carboxylate reductase Machinery gene
  H4992_RS04135 (H4992_04135) ctsT 764139..764441 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=411906 H4992_RS04105 WP_002865738.1 758939..759490(+) (ssb) [Campylobacter jejuni strain C201]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=411906 H4992_RS04105 WP_002865738.1 758939..759490(+) (ssb) [Campylobacter jejuni strain C201]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361