Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H5A01_RS07580 Genome accession   NZ_CP059964
Coordinates   1399213..1399764 (-) Length   183 a.a.
NCBI ID   WP_002921394.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C1922C72     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1394213..1404764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A01_RS07550 (H5A01_07550) ctsT 1394259..1394561 (-) 303 WP_032582988.1 transformation system protein Machinery gene
  H5A01_RS07555 (H5A01_07555) proC 1394558..1395292 (-) 735 WP_032582987.1 pyrroline-5-carboxylate reductase Machinery gene
  H5A01_RS07560 (H5A01_07560) fliW 1395292..1395681 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  H5A01_RS07565 (H5A01_07565) - 1395842..1396489 (+) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  H5A01_RS07570 (H5A01_07570) lon 1396506..1398881 (+) 2376 WP_002852988.1 endopeptidase La -
  H5A01_RS07575 (H5A01_07575) rpsR 1398942..1399202 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  H5A01_RS07580 (H5A01_07580) ssb 1399213..1399764 (-) 552 WP_002921394.1 single-stranded DNA-binding protein Machinery gene
  H5A01_RS07585 (H5A01_07585) rpsF 1399773..1400150 (-) 378 WP_002853062.1 30S ribosomal protein S6 -
  H5A01_RS07590 (H5A01_07590) - 1400237..1401103 (-) 867 WP_032592436.1 VirK family antimicrobial peptide resistance protein -
  H5A01_RS07595 (H5A01_07595) rseP 1401096..1402202 (-) 1107 WP_002852927.1 RIP metalloprotease RseP -
  H5A01_RS07600 (H5A01_07600) pgsA 1402199..1402735 (-) 537 WP_052793045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H5A01_RS07605 (H5A01_07605) rdxA 1402860..1403465 (-) 606 WP_182263769.1 NAD(P)H-dependent oxidoreductase -
  H5A01_RS07610 (H5A01_07610) - 1403465..1404086 (-) 622 Protein_1495 NAD(P)H-dependent oxidoreductase -
  H5A01_RS07615 (H5A01_07615) - 1404150..1404575 (-) 426 WP_182263770.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20740.63 Da        Isoelectric Point: 5.0431

>NTDB_id=411792 H5A01_RS07580 WP_002921394.1 1399213..1399764(-) (ssb) [Campylobacter jejuni strain C1922C72]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=411792 H5A01_RS07580 WP_002921394.1 1399213..1399764(-) (ssb) [Campylobacter jejuni strain C1922C72]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393