Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   GSR16_RS09510 Genome accession   NZ_CP047241
Coordinates   2111384..2112175 (-) Length   263 a.a.
NCBI ID   WP_159876798.1    Uniprot ID   -
Organism   Aquitalea denitrificans strain 5YN1-3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2106384..2117175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSR16_RS09500 purL 2106849..2110808 (-) 3960 WP_159876796.1 phosphoribosylformylglycinamidine synthase -
  GSR16_RS09505 - 2110956..2111294 (+) 339 WP_045846995.1 P-II family nitrogen regulator -
  GSR16_RS09510 comL 2111384..2112175 (-) 792 WP_159876798.1 outer membrane protein assembly factor BamD Machinery gene
  GSR16_RS09515 rluD 2112174..2113277 (+) 1104 WP_159876800.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GSR16_RS09520 pgeF 2113264..2114019 (+) 756 WP_159876802.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30159.22 Da        Isoelectric Point: 7.3401

>NTDB_id=411788 GSR16_RS09510 WP_159876798.1 2111384..2112175(-) (comL) [Aquitalea denitrificans strain 5YN1-3]
MKRYVVAAMLVMGLAGCATTETYDETRGWTVEKLYSEARDELNSGNYTRAVKLYETLEARYPYGRYAQQAEMDLAYTHYK
DNEPELAVAAADRFIKLHPAHANVDYVYYLKGLVYYNDDQGMLSKWAGQDMSERDPKAARESFLAFRELTTRFPNSKYSA
DALEKMNRLVDALGGGEMHVARYYMKRGAYLAAANRAQNVVKEYSNTKYPEEALALMSVAYDKLGMAQLGGDAKRVLALN
YPNSKYLAQPWQVEEMPWWKVWK

Nucleotide


Download         Length: 792 bp        

>NTDB_id=411788 GSR16_RS09510 WP_159876798.1 2111384..2112175(-) (comL) [Aquitalea denitrificans strain 5YN1-3]
ATGAAAAGATACGTTGTAGCAGCAATGTTGGTGATGGGGCTTGCCGGTTGTGCAACCACGGAAACCTACGACGAAACGCG
CGGCTGGACCGTGGAAAAGCTCTACTCGGAAGCTCGGGATGAACTGAACAGCGGTAATTATACCCGTGCTGTCAAGCTGT
ACGAAACGCTGGAAGCGCGCTACCCCTATGGCCGCTATGCCCAGCAGGCCGAAATGGACCTGGCCTATACGCATTACAAG
GATAATGAACCGGAACTGGCCGTGGCCGCTGCCGACCGTTTCATCAAGCTGCACCCTGCCCACGCCAACGTGGACTATGT
GTATTACCTGAAGGGCCTGGTGTACTACAACGACGACCAGGGCATGTTGTCCAAGTGGGCCGGCCAGGACATGAGCGAGC
GCGACCCGAAAGCTGCCCGCGAGTCCTTCCTTGCCTTCCGCGAGCTGACCACGCGCTTCCCGAACAGCAAGTATAGTGCG
GATGCGCTGGAAAAGATGAACCGTCTGGTGGATGCACTGGGTGGTGGCGAAATGCACGTGGCGCGCTACTACATGAAGCG
CGGTGCCTATCTGGCCGCTGCCAATCGCGCGCAGAACGTAGTGAAGGAATACTCCAACACCAAGTATCCGGAAGAAGCGT
TGGCGCTGATGTCGGTTGCCTACGATAAGCTGGGCATGGCCCAGTTGGGTGGTGATGCCAAGCGCGTGCTGGCGCTGAAC
TATCCCAACAGCAAGTATCTGGCGCAGCCGTGGCAAGTGGAAGAAATGCCGTGGTGGAAGGTGTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

57.519

100

0.582
  comL Neisseria gonorrhoeae MS11

56.391

100

0.57

Multiple sequence alignment