Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   H5A01_RS03275 Genome accession   NZ_CP059964
Coordinates   610316..610981 (-) Length   221 a.a.
NCBI ID   WP_057095925.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C1922C72     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 605316..615981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A01_RS03260 (H5A01_03260) groES 607172..607432 (+) 261 WP_002825273.1 co-chaperone GroES -
  H5A01_RS03265 (H5A01_03265) groL 607453..609090 (+) 1638 WP_002859291.1 chaperonin GroEL -
  H5A01_RS03270 (H5A01_03270) dccS 609133..610323 (-) 1191 WP_057095924.1 two-component system sensor histidine kinase DccS -
  H5A01_RS03275 (H5A01_03275) ciaR 610316..610981 (-) 666 WP_057095925.1 two-component system response regulator DccR Regulator
  H5A01_RS03280 (H5A01_03280) - 611129..611728 (+) 600 WP_002859294.1 bacteriohemerythrin -
  H5A01_RS03285 (H5A01_03285) - 611739..611987 (+) 249 WP_002853192.1 ribbon-helix-helix domain-containing protein -
  H5A01_RS03295 (H5A01_03295) - 612246..613493 (-) 1248 WP_002853241.1 ArsS family sensor histidine kinase -
  H5A01_RS03300 (H5A01_03300) - 613490..614164 (-) 675 WP_002853196.1 response regulator transcription factor -
  H5A01_RS03305 (H5A01_03305) htrA 614240..615658 (-) 1419 WP_002860448.1 serine protease HtrA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25477.18 Da        Isoelectric Point: 4.7616

>NTDB_id=411776 H5A01_RS03275 WP_057095925.1 610316..610981(-) (ciaR) [Campylobacter jejuni strain C1922C72]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERHFDLLILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALALPSKEIK
LLSLLLKNKNSFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=411776 H5A01_RS03275 WP_057095925.1 610316..610981(-) (ciaR) [Campylobacter jejuni strain C1922C72]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGTTTAAGTGAGATCATTGAAGAGTTTTTAAACGATGAAGGATA
TGAAGTATTTTTATGCGATAATGCACAAGAAGCTTTAGATATGGCTTATGAAAGACATTTTGATCTTTTGATTTTAGATG
TCAAAGTTCCTTTGGGAGATGGATTTTCATTACTTAAAGAATTGAGAAAAAGTGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAACGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGGG
ATGGATTTAGGTTCGAATTTACTACACAAATTCTTTATCATAATAATAAAGCTTTGGCTTTGCCGAGCAAAGAGATTAAA
CTTTTGTCTTTATTGCTTAAAAATAAAAACAGCTTTTTAAGCACAGAGAGAATTTTTGAAGAACTTTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGAGCTTATGTAAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAACCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-219)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362