Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   GRT08_RS05640 Genome accession   NZ_CP047234
Coordinates   1080976..1081167 (+) Length   63 a.a.
NCBI ID   WP_007409124.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1075976..1086167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS05610 (GRT08_05560) argF 1076827..1077798 (+) 972 WP_377803081.1 ornithine carbamoyltransferase -
  GRT08_RS05615 (GRT08_05565) - 1077875..1078054 (+) 180 WP_003155070.1 YjzC family protein -
  GRT08_RS05620 (GRT08_05570) - 1078091..1078276 (-) 186 WP_032874447.1 YjzD family protein -
  GRT08_RS05625 (GRT08_05575) - 1078537..1079271 (+) 735 WP_377803082.1 hypothetical protein -
  GRT08_RS05630 (GRT08_05580) - 1079354..1079920 (+) 567 WP_007409126.1 hypothetical protein -
  GRT08_RS05635 (GRT08_05585) med 1080010..1080963 (+) 954 WP_007409125.1 BMP family ABC transporter substrate-binding protein Regulator
  GRT08_RS05640 (GRT08_05590) comZ 1080976..1081167 (+) 192 WP_007409124.1 ComZ family protein Regulator
  GRT08_RS05645 (GRT08_05595) - 1081196..1081414 (-) 219 WP_007409123.1 hypothetical protein -
  GRT08_RS05650 (GRT08_05600) - 1081582..1082520 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  GRT08_RS05655 (GRT08_05605) fabF 1082543..1083781 (+) 1239 WP_015417206.1 beta-ketoacyl-ACP synthase II -
  GRT08_RS05660 (GRT08_05610) - 1083864..1084649 (+) 786 WP_061046904.1 DUF2268 domain-containing protein -
  GRT08_RS05665 (GRT08_05615) - 1084823..1085809 (+) 987 WP_012117279.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7185.30 Da        Isoelectric Point: 4.2259

>NTDB_id=411667 GRT08_RS05640 WP_007409124.1 1080976..1081167(+) (comZ) [Bacillus amyloliquefaciens strain FJ4]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSLEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=411667 GRT08_RS05640 WP_007409124.1 1080976..1081167(+) (comZ) [Bacillus amyloliquefaciens strain FJ4]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTTTGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

84.483

92.063

0.778

Multiple sequence alignment