Detailed information NTG0411666

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: GRT08_RS05635
• Genome accession: NZ_CP047234
• Coordinates: 1080010..1080963 (+)
• Length: 317 a.a.
• NCBI ID: WP_007409125.1
• Uniprot ID: A7Z3B8
• Organism: Bacillus amyloliquefaciens strain FJ4
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1075010..1085963

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRT08_RS05610 (GRT08_05560)	argF	1076827..1077798 (+)	972	WP_377803081.1	ornithine carbamoyltransferase	-
GRT08_RS05615 (GRT08_05565)	-	1077875..1078054 (+)	180	WP_003155070.1	YjzC family protein	-
GRT08_RS05620 (GRT08_05570)	-	1078091..1078276 (-)	186	WP_032874447.1	YjzD family protein	-
GRT08_RS05625 (GRT08_05575)	-	1078537..1079271 (+)	735	WP_377803082.1	hypothetical protein	-
GRT08_RS05630 (GRT08_05580)	-	1079354..1079920 (+)	567	WP_007409126.1	hypothetical protein	-
GRT08_RS05635 (GRT08_05585)	med	1080010..1080963 (+)	954	WP_007409125.1	BMP family ABC transporter substrate-binding protein	Regulator
GRT08_RS05640 (GRT08_05590)	comZ	1080976..1081167 (+)	192	WP_007409124.1	ComZ family protein	Regulator
GRT08_RS05645 (GRT08_05595)	-	1081196..1081414 (-)	219	WP_007409123.1	hypothetical protein	-
GRT08_RS05650 (GRT08_05600)	-	1081582..1082520 (+)	939	WP_007409122.1	beta-ketoacyl-ACP synthase III	-
GRT08_RS05655 (GRT08_05605)	fabF	1082543..1083781 (+)	1239	WP_015417206.1	beta-ketoacyl-ACP synthase II	-
GRT08_RS05660 (GRT08_05610)	-	1083864..1084649 (+)	786	WP_061046904.1	DUF2268 domain-containing protein	-
GRT08_RS05665 (GRT08_05615)	-	1084823..1085809 (+)	987	WP_012117279.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35342.99 Da
• Isoelectric Point: 4.6686

>NTDB_id=411666 GRT08_RS05635 WP_007409125.1 1080010..1080963(+) (med) [Bacillus amyloliquefaciens strain FJ4]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide

• Length: 954 bp

>NTDB_id=411666 GRT08_RS05635 WP_007409125.1 1080010..1080963(+) (med) [Bacillus amyloliquefaciens strain FJ4]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACTATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACAGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

3D structure

• AlphaFold DB: A7Z3B8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	78.549	100	0.785