Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | GR342_RS05390 | Genome accession | NZ_CP047216 |
| Coordinates | 1053738..1054043 (+) | Length | 101 a.a. |
| NCBI ID | WP_002777852.1 | Uniprot ID | A0A3Z9CUC7 |
| Organism | Campylobacter coli strain SH89 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1048738..1059043
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GR342_RS05365 (GR342_05305) | rpsR | 1049097..1049357 (+) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
| GR342_RS05370 (GR342_05310) | lon | 1049413..1051788 (-) | 2376 | WP_002783351.1 | endopeptidase La | - |
| GR342_RS05375 (GR342_05315) | bamD | 1051804..1052451 (-) | 648 | WP_002780248.1 | outer membrane protein assembly factor BamD | - |
| GR342_RS05380 (GR342_05320) | fliW | 1052615..1053004 (+) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| GR342_RS05385 (GR342_05325) | proC | 1053004..1053741 (+) | 738 | WP_002834520.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| GR342_RS05390 (GR342_05330) | ctsT | 1053738..1054043 (+) | 306 | WP_002777852.1 | hypothetical protein | Machinery gene |
| GR342_RS05395 (GR342_05335) | - | 1054036..1054704 (+) | 669 | WP_002780245.1 | hypothetical protein | - |
| GR342_RS05400 (GR342_05340) | - | 1054701..1055153 (+) | 453 | WP_002777117.1 | hypothetical protein | - |
| GR342_RS05405 (GR342_05345) | - | 1055146..1055775 (-) | 630 | WP_002780243.1 | uroporphyrinogen-III synthase | - |
| GR342_RS05410 (GR342_05350) | thiE | 1055753..1056385 (-) | 633 | WP_002777120.1 | thiamine phosphate synthase | - |
| GR342_RS05415 (GR342_05355) | thiD | 1056375..1057187 (-) | 813 | WP_002786353.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| GR342_RS05420 (GR342_05360) | - | 1057187..1057870 (-) | 684 | WP_002780240.1 | 3-methyladenine DNA glycosylase | - |
| GR342_RS05425 (GR342_05365) | - | 1057867..1058628 (-) | 762 | WP_072212081.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12396.25 Da Isoelectric Point: 6.0617
>NTDB_id=411566 GR342_RS05390 WP_002777852.1 1053738..1054043(+) (ctsT) [Campylobacter coli strain SH89]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=411566 GR342_RS05390 WP_002777852.1 1053738..1054043(+) (ctsT) [Campylobacter coli strain SH89]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
50 |
97.03 |
0.485 |