Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GR342_RS03225 Genome accession   NZ_CP047216
Coordinates   633472..634242 (+) Length   256 a.a.
NCBI ID   WP_250414716.1    Uniprot ID   A0A5T0VBP3
Organism   Campylobacter coli strain SH89     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 628472..639242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR342_RS03210 (GR342_03185) - 629369..631303 (-) 1935 WP_072228370.1 ribonuclease R family protein -
  GR342_RS03215 (GR342_03190) ilvC 631426..632448 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  GR342_RS03220 (GR342_03195) - 632451..633482 (+) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  GR342_RS03225 (GR342_03200) dprA 633472..634242 (+) 771 WP_250414716.1 DNA-processing protein DprA Machinery gene
  GR342_RS03230 (GR342_03205) ruvX 634239..634619 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  GR342_RS03235 (GR342_03210) - 634609..635484 (+) 876 WP_002781660.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GR342_RS03240 (GR342_03215) msrA 635707..636207 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  GR342_RS03245 (GR342_03220) ppa 636255..636773 (-) 519 WP_002776378.1 inorganic diphosphatase -
  GR342_RS03250 (GR342_03225) - 636783..637358 (-) 576 WP_002781658.1 adenylate kinase -
  GR342_RS03255 (GR342_03230) aspS 637355..639106 (-) 1752 WP_072222169.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28807.18 Da        Isoelectric Point: 5.0727

>NTDB_id=411562 GR342_RS03225 WP_250414716.1 633472..634242(+) (dprA) [Campylobacter coli strain SH89]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMSSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=411562 GR342_RS03225 WP_250414716.1 633472..634242(+) (dprA) [Campylobacter coli strain SH89]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGTCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0VBP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.172

100

0.762
  dprA Helicobacter pylori 26695

47.5

93.75

0.445

Multiple sequence alignment