Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   GR341_RS07750 Genome accession   NZ_CP047214
Coordinates   1498759..1499070 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain QL_1_15     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1493759..1504070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR341_RS07730 (GR341_07745) ctsE 1494635..1496197 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  GR341_RS07735 (GR341_07750) - 1496190..1496777 (-) 588 WP_002810825.1 CDC27 family protein -
  GR341_RS07740 (GR341_07755) ctsP 1496774..1497370 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  GR341_RS07745 (GR341_07760) ctsD 1497363..1498781 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  GR341_RS07750 (GR341_07765) ctsR 1498759..1499070 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  GR341_RS07755 (GR341_07770) nifJ 1499094..1502654 (-) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  GR341_RS07760 (GR341_07775) - 1502758..1502841 (-) 84 Protein_1501 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=411556 GR341_RS07750 WP_002779316.1 1498759..1499070(-) (ctsR) [Campylobacter coli strain QL_1_15]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=411556 GR341_RS07750 WP_002779316.1 1498759..1499070(-) (ctsR) [Campylobacter coli strain QL_1_15]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment