Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   GR341_RS07745 Genome accession   NZ_CP047214
Coordinates   1497363..1498781 (-) Length   472 a.a.
NCBI ID   WP_002779315.1    Uniprot ID   -
Organism   Campylobacter coli strain QL_1_15     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1492363..1503781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR341_RS07720 (GR341_07735) - 1492712..1493476 (+) 765 WP_002781157.1 TSUP family transporter -
  GR341_RS07725 (GR341_07740) ctsF 1493473..1494648 (-) 1176 WP_002842963.1 type II secretion system F family protein Machinery gene
  GR341_RS07730 (GR341_07745) ctsE 1494635..1496197 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  GR341_RS07735 (GR341_07750) - 1496190..1496777 (-) 588 WP_002810825.1 CDC27 family protein -
  GR341_RS07740 (GR341_07755) ctsP 1496774..1497370 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  GR341_RS07745 (GR341_07760) ctsD 1497363..1498781 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  GR341_RS07750 (GR341_07765) ctsR 1498759..1499070 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  GR341_RS07755 (GR341_07770) nifJ 1499094..1502654 (-) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  GR341_RS07760 (GR341_07775) - 1502758..1502841 (-) 84 Protein_1501 HAD family hydrolase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53513.05 Da        Isoelectric Point: 6.5150

>NTDB_id=411555 GR341_RS07745 WP_002779315.1 1497363..1498781(-) (ctsD) [Campylobacter coli strain QL_1_15]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNTHIPSLRELGFKYNE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=411555 GR341_RS07745 WP_002779315.1 1497363..1498781(-) (ctsD) [Campylobacter coli strain QL_1_15]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGCCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGACCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACAAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCTATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGATAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAGTACAATGAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

80.72

100

0.807

Multiple sequence alignment