Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GR339_RS05815 Genome accession   NZ_CP047212
Coordinates   1143111..1143881 (-) Length   256 a.a.
NCBI ID   WP_002781662.1    Uniprot ID   A0A3Z9V747
Organism   Campylobacter coli strain JZ_1_79     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1138111..1148881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR339_RS05785 (GR339_05735) aspS 1138247..1139998 (+) 1752 WP_002812716.1 aspartate--tRNA ligase -
  GR339_RS05790 (GR339_05740) - 1139995..1140570 (+) 576 WP_002781658.1 adenylate kinase -
  GR339_RS05795 (GR339_05745) ppa 1140580..1141098 (+) 519 WP_002776378.1 inorganic diphosphatase -
  GR339_RS05800 (GR339_05750) msrA 1141146..1141646 (+) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  GR339_RS05805 (GR339_05755) - 1141869..1142744 (-) 876 WP_002810977.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GR339_RS05810 (GR339_05760) ruvX 1142734..1143114 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  GR339_RS05815 (GR339_05765) dprA 1143111..1143881 (-) 771 WP_002781662.1 DNA-processing protein DprA Machinery gene
  GR339_RS05820 (GR339_05770) - 1143871..1144923 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  GR339_RS05825 (GR339_05775) ilvC 1144926..1145948 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  GR339_RS05830 (GR339_05780) - 1146071..1148005 (+) 1935 WP_233915242.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28817.22 Da        Isoelectric Point: 5.0727

>NTDB_id=411530 GR339_RS05815 WP_002781662.1 1143111..1143881(-) (dprA) [Campylobacter coli strain JZ_1_79]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=411530 GR339_RS05815 WP_002781662.1 1143111..1143881(-) (dprA) [Campylobacter coli strain JZ_1_79]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGTAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9V747

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.917

93.75

0.449

Multiple sequence alignment