Detailed information NTG0411515

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: GR339_RS01695
• Genome accession: NZ_CP047212
• Coordinates: 329422..330840 (+)
• Length: 472 a.a.
• NCBI ID: WP_206897241.1
• Uniprot ID: -
• Organism: Campylobacter coli strain JZ_1_79
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 324422..335840

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GR339_RS01680 (GR339_01660)	-	324807..325445 (+)	639	WP_233909303.1	HAD family hydrolase	-
GR339_RS01685 (GR339_01665)	nifJ	325549..329109 (+)	3561	WP_250429452.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
GR339_RS01690 (GR339_01670)	ctsR	329133..329444 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
GR339_RS01695 (GR339_01675)	ctsD	329422..330840 (+)	1419	WP_206897241.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
GR339_RS01700 (GR339_01680)	ctsP	330833..331429 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
GR339_RS01705 (GR339_01685)	-	331426..332022 (+)	597	WP_002779313.1	CDC27 family protein	-
GR339_RS01710 (GR339_01690)	ctsE	332015..333577 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
GR339_RS01715 (GR339_01695)	ctsF	333564..334739 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
GR339_RS01720 (GR339_01700)	-	334736..335500 (-)	765	WP_002781157.1	TSUP family transporter	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53540.08 Da
• Isoelectric Point: 6.5150

>NTDB_id=411515 GR339_RS01695 WP_206897241.1 329422..330840(+) (ctsD) [Campylobacter coli strain JZ_1_79]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMNLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNTHIPSLRELGFKYNE

Nucleotide

• Length: 1419 bp

>NTDB_id=411515 GR339_RS01695 WP_206897241.1 329422..330840(+) (ctsD) [Campylobacter coli strain JZ_1_79]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGCCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAATTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGATCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGACAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-456)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	80.508	100	0.805