Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   GR339_RS01690 Genome accession   NZ_CP047212
Coordinates   329133..329444 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain JZ_1_79     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324133..334444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR339_RS01680 (GR339_01660) - 324807..325445 (+) 639 WP_233909303.1 HAD family hydrolase -
  GR339_RS01685 (GR339_01665) nifJ 325549..329109 (+) 3561 WP_250429452.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  GR339_RS01690 (GR339_01670) ctsR 329133..329444 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  GR339_RS01695 (GR339_01675) ctsD 329422..330840 (+) 1419 WP_206897241.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  GR339_RS01700 (GR339_01680) ctsP 330833..331429 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  GR339_RS01705 (GR339_01685) - 331426..332022 (+) 597 WP_002779313.1 CDC27 family protein -
  GR339_RS01710 (GR339_01690) ctsE 332015..333577 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=411514 GR339_RS01690 WP_002779316.1 329133..329444(+) (ctsR) [Campylobacter coli strain JZ_1_79]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=411514 GR339_RS01690 WP_002779316.1 329133..329444(+) (ctsR) [Campylobacter coli strain JZ_1_79]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment