Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   VAA_RS12330 Genome accession   NC_015633
Coordinates   2710823..2711440 (+) Length   205 a.a.
NCBI ID   WP_013857672.1    Uniprot ID   Q8VQC6
Organism   Vibrio anguillarum 775     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2705823..2716440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA_RS12310 (VAA_00747) - 2706188..2707108 (-) 921 WP_026027559.1 ABC transporter ATP-binding protein -
  VAA_RS12315 (VAA_00746) - 2707250..2708917 (-) 1668 WP_038148651.1 SulP family inorganic anion transporter -
  VAA_RS12320 (VAA_00745) can 2709168..2709836 (+) 669 WP_013857670.1 carbonate dehydratase -
  VAA_RS12325 (VAA_00744) hpt 2709921..2710451 (-) 531 WP_010319544.1 hypoxanthine phosphoribosyltransferase -
  VAA_RS12330 (VAA_00743) opaR 2710823..2711440 (+) 618 WP_013857672.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  VAA_RS12335 (VAA_00742) lpdA 2711558..2712985 (-) 1428 WP_013857673.1 dihydrolipoyl dehydrogenase -
  VAA_RS12340 (VAA_00741) aceF 2713286..2715169 (-) 1884 WP_013857674.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23700.30 Da        Isoelectric Point: 6.3812

>NTDB_id=41149 VAA_RS12330 WP_013857672.1 2710823..2711440(+) (opaR) [Vibrio anguillarum 775]
METSIEKRPRTRLSPQKRKLQLMEIALEVFATRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTHVVRQFSNFL
ADNIDLDLHAKDNLTNITTKMISLVIEDCHWLKVWFEWSASTREEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDRHEP
EHLATLFLGIFYSLFVQANRIQDEASMGVLVKSYLSMLCIYKKDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=41149 VAA_RS12330 WP_013857672.1 2710823..2711440(+) (opaR) [Vibrio anguillarum 775]
ATGGAAACATCGATAGAAAAACGCCCCAGAACTCGCTTATCACCACAAAAACGCAAACTTCAACTGATGGAAATCGCTCT
TGAAGTGTTTGCTACACGGGGAATAGGCCGAGGTGGCCACGCAGATATTGCTGAAATCGCCCAAGTTTCAGTCGCGACTG
TCTTTAACTACTTTCCAACCCGAGAAGATTTAGTCGACGACGTACTCACTCATGTTGTACGTCAGTTTTCAAACTTCCTC
GCAGATAATATTGATCTTGATTTGCATGCGAAAGATAACTTAACCAACATCACCACTAAGATGATTTCTCTTGTGATTGA
AGATTGTCACTGGTTAAAAGTATGGTTTGAATGGAGCGCTTCAACGCGCGAAGAAGTGTGGCCACTTTTTGTCTCCACCA
ACCGTACTAATCAACTTTTGGTACAAAATATGTTTATCAAAGCCATTGAACGTGGCGAAGTGTGCGATCGGCATGAGCCA
GAACATCTTGCTACGCTCTTTCTTGGTATCTTCTACTCACTGTTTGTACAAGCAAATCGTATACAAGACGAAGCCAGCAT
GGGTGTACTAGTGAAAAGCTACCTCAGCATGCTCTGCATCTATAAAAAAGATCACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.683

98.537

0.805
  hapR Vibrio cholerae C6706

74.257

98.537

0.732
  hapR Vibrio cholerae strain A1552

74.257

98.537

0.732

Multiple sequence alignment