Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   GR340_RS08155 Genome accession   NZ_CP047197
Coordinates   1558618..1558929 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain JZ_1_95     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1553618..1563929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR340_RS08135 (GR340_08015) ctsE 1554485..1556047 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  GR340_RS08140 (GR340_08020) - 1556040..1556636 (-) 597 WP_002779313.1 CDC27 family protein -
  GR340_RS08145 (GR340_08025) ctsP 1556633..1557229 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  GR340_RS08150 (GR340_08030) ctsD 1557222..1558640 (-) 1419 WP_277737386.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  GR340_RS08155 (GR340_08035) ctsR 1558618..1558929 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  GR340_RS08160 (GR340_08040) nifJ 1558953..1562513 (-) 3561 WP_277737387.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  GR340_RS08165 (GR340_08045) - 1562617..1563255 (-) 639 WP_002781164.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=411469 GR340_RS08155 WP_002779316.1 1558618..1558929(-) (ctsR) [Campylobacter coli strain JZ_1_95]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=411469 GR340_RS08155 WP_002779316.1 1558618..1558929(-) (ctsR) [Campylobacter coli strain JZ_1_95]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment