Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   GR340_RS08150 Genome accession   NZ_CP047197
Coordinates   1557222..1558640 (-) Length   472 a.a.
NCBI ID   WP_277737386.1    Uniprot ID   -
Organism   Campylobacter coli strain JZ_1_95     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552222..1563640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR340_RS08125 (GR340_08005) - 1552562..1553326 (+) 765 WP_277737385.1 TSUP family transporter -
  GR340_RS08130 (GR340_08010) ctsF 1553323..1554498 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  GR340_RS08135 (GR340_08015) ctsE 1554485..1556047 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  GR340_RS08140 (GR340_08020) - 1556040..1556636 (-) 597 WP_002779313.1 CDC27 family protein -
  GR340_RS08145 (GR340_08025) ctsP 1556633..1557229 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  GR340_RS08150 (GR340_08030) ctsD 1557222..1558640 (-) 1419 WP_277737386.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  GR340_RS08155 (GR340_08035) ctsR 1558618..1558929 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  GR340_RS08160 (GR340_08040) nifJ 1558953..1562513 (-) 3561 WP_277737387.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  GR340_RS08165 (GR340_08045) - 1562617..1563255 (-) 639 WP_002781164.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53555.13 Da        Isoelectric Point: 6.5150

>NTDB_id=411468 GR340_RS08150 WP_277737386.1 1557222..1558640(-) (ctsD) [Campylobacter coli strain JZ_1_95]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIVDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNTHIPSLRELGFKYNE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=411468 GR340_RS08150 WP_277737386.1 1557222..1558640(-) (ctsD) [Campylobacter coli strain JZ_1_95]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGCCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGATCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTGAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGTCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACTCCAAGCA
TAGTAGACAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

80.508

100

0.805

Multiple sequence alignment