Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | GR340_RS06140 | Genome accession | NZ_CP047197 |
| Coordinates | 1147267..1147572 (+) | Length | 101 a.a. |
| NCBI ID | WP_002777852.1 | Uniprot ID | A0A3Z9CUC7 |
| Organism | Campylobacter coli strain JZ_1_95 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1142267..1152572
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GR340_RS06115 (GR340_06005) | rpsR | 1142625..1142885 (+) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
| GR340_RS06120 (GR340_06010) | lon | 1142942..1145317 (-) | 2376 | WP_277737290.1 | endopeptidase La | - |
| GR340_RS06125 (GR340_06015) | bamD | 1145333..1145980 (-) | 648 | WP_002780248.1 | outer membrane protein assembly factor BamD | - |
| GR340_RS06130 (GR340_06020) | fliW | 1146144..1146533 (+) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| GR340_RS06135 (GR340_06025) | proC | 1146533..1147270 (+) | 738 | WP_233908840.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| GR340_RS06140 (GR340_06030) | ctsT | 1147267..1147572 (+) | 306 | WP_002777852.1 | hypothetical protein | Machinery gene |
| GR340_RS06145 (GR340_06035) | - | 1147565..1148233 (+) | 669 | WP_002790524.1 | hypothetical protein | - |
| GR340_RS06150 (GR340_06040) | - | 1148230..1148682 (+) | 453 | WP_002777117.1 | hypothetical protein | - |
| GR340_RS06155 (GR340_06045) | - | 1148675..1149304 (-) | 630 | WP_233908841.1 | uroporphyrinogen-III synthase | - |
| GR340_RS06160 (GR340_06050) | thiE | 1149282..1149914 (-) | 633 | WP_277737291.1 | thiamine phosphate synthase | - |
| GR340_RS06165 (GR340_06055) | thiD | 1149904..1150716 (-) | 813 | WP_063266019.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| GR340_RS06170 (GR340_06060) | - | 1150716..1151399 (-) | 684 | WP_002777124.1 | 3-methyladenine DNA glycosylase | - |
| GR340_RS06175 (GR340_06065) | - | 1151396..1152157 (-) | 762 | WP_025443303.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12396.25 Da Isoelectric Point: 6.0617
>NTDB_id=411454 GR340_RS06140 WP_002777852.1 1147267..1147572(+) (ctsT) [Campylobacter coli strain JZ_1_95]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=411454 GR340_RS06140 WP_002777852.1 1147267..1147572(+) (ctsT) [Campylobacter coli strain JZ_1_95]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
50 |
97.03 |
0.485 |