Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GR340_RS03540 Genome accession   NZ_CP047197
Coordinates   670568..671338 (+) Length   256 a.a.
NCBI ID   WP_277737542.1    Uniprot ID   -
Organism   Campylobacter coli strain JZ_1_95     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 665568..676338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR340_RS03525 (GR340_03465) - 666444..668378 (-) 1935 WP_002816777.1 ribonuclease R family protein -
  GR340_RS03530 (GR340_03470) ilvC 668501..669523 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  GR340_RS03535 (GR340_03475) - 669526..670578 (+) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  GR340_RS03540 (GR340_03480) dprA 670568..671338 (+) 771 WP_277737542.1 DNA-processing protein DprA Machinery gene
  GR340_RS03545 (GR340_03485) ruvX 671335..671715 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  GR340_RS03550 (GR340_03490) - 671705..672580 (+) 876 WP_002781660.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GR340_RS03555 (GR340_03495) msrA 672803..673303 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  GR340_RS03560 (GR340_03500) ppa 673351..673869 (-) 519 WP_002776378.1 inorganic diphosphatase -
  GR340_RS03565 (GR340_03505) - 673879..674454 (-) 576 WP_002781658.1 adenylate kinase -
  GR340_RS03570 (GR340_03510) aspS 674451..676202 (-) 1752 WP_233908783.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28792.23 Da        Isoelectric Point: 4.9337

>NTDB_id=411450 GR340_RS03540 WP_277737542.1 670568..671338(+) (dprA) [Campylobacter coli strain JZ_1_95]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNMLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=411450 GR340_RS03540 WP_277737542.1 670568..671338(+) (dprA) [Campylobacter coli strain JZ_1_95]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATATGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGTAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.172

100

0.762
  dprA Helicobacter pylori 26695

47.5

93.75

0.445

Multiple sequence alignment