Detailed information NTG0411403

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: GQY29_RS06140
• Genome accession: NZ_CP047191
• Coordinates: 1146754..1147680 (+)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain EU01
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1141754..1152680

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQY29_RS06130 (GQY29_06130)	amiA	1143232..1145199 (+)	1968	WP_014621802.1	peptide ABC transporter substrate-binding protein	Regulator
GQY29_RS06135 (GQY29_06135)	amiC	1145261..1146754 (+)	1494	WP_014608541.1	ABC transporter permease	Regulator
GQY29_RS06140 (GQY29_06140)	amiD	1146754..1147680 (+)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
GQY29_RS06145 (GQY29_06145)	amiE	1147690..1148775 (+)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
GQY29_RS06150 (GQY29_06150)	amiF	1148768..1149697 (+)	930	WP_002951426.1	ATP-binding cassette domain-containing protein	Regulator
GQY29_RS06155 (GQY29_06155)	-	1149747..1150532 (-)	786	WP_002951425.1	hypothetical protein	-
GQY29_RS06160 (GQY29_06160)	-	1150544..1151242 (-)	699	WP_023909821.1	ABC transporter ATP-binding protein	-
GQY29_RS06165 (GQY29_06165)	-	1151247..1151624 (-)	378	WP_011681413.1	GntR family transcriptional regulator	-
GQY29_RS06170 (GQY29_06170)	-	1151809..1152603 (+)	795	WP_011681412.1	HAD family hydrolase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=411403 GQY29_RS06140 WP_002946409.1 1146754..1147680(+) (amiD) [Streptococcus thermophilus strain EU01]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=411403 GQY29_RS06140 WP_002946409.1 1146754..1147680(+) (amiD) [Streptococcus thermophilus strain EU01]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964