Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   GQY29_RS06150 Genome accession   NZ_CP047191
Coordinates   1148768..1149697 (+) Length   309 a.a.
NCBI ID   WP_002951426.1    Uniprot ID   A0A7U7CIU5
Organism   Streptococcus thermophilus strain EU01     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143768..1154697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQY29_RS06135 (GQY29_06135) amiC 1145261..1146754 (+) 1494 WP_014608541.1 ABC transporter permease Regulator
  GQY29_RS06140 (GQY29_06140) amiD 1146754..1147680 (+) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  GQY29_RS06145 (GQY29_06145) amiE 1147690..1148775 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  GQY29_RS06150 (GQY29_06150) amiF 1148768..1149697 (+) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  GQY29_RS06155 (GQY29_06155) - 1149747..1150532 (-) 786 WP_002951425.1 hypothetical protein -
  GQY29_RS06160 (GQY29_06160) - 1150544..1151242 (-) 699 WP_023909821.1 ABC transporter ATP-binding protein -
  GQY29_RS06165 (GQY29_06165) - 1151247..1151624 (-) 378 WP_011681413.1 GntR family transcriptional regulator -
  GQY29_RS06170 (GQY29_06170) - 1151809..1152603 (+) 795 WP_011681412.1 HAD family hydrolase -
  GQY29_RS06175 (GQY29_06175) - 1152596..1153411 (+) 816 WP_024010001.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35171.28 Da        Isoelectric Point: 6.5989

>NTDB_id=411405 GQY29_RS06150 WP_002951426.1 1148768..1149697(+) (amiF) [Streptococcus thermophilus strain EU01]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=411405 GQY29_RS06150 WP_002951426.1 1148768..1149697(+) (amiF) [Streptococcus thermophilus strain EU01]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGATCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7CIU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

100

100

1
  amiF Streptococcus thermophilus LMD-9

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981

Multiple sequence alignment