Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GRQ40_RS04290 Genome accession   NZ_CP047158
Coordinates   886332..888146 (+) Length   604 a.a.
NCBI ID   WP_159719436.1    Uniprot ID   -
Organism   Anoxybacillus sp. PDR2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 881332..893146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRQ40_RS04270 (GRQ40_04270) - 881669..882337 (-) 669 WP_159719432.1 TerC family protein -
  GRQ40_RS04275 (GRQ40_04275) mecA 882532..883203 (+) 672 WP_159719433.1 adaptor protein MecA -
  GRQ40_RS04280 (GRQ40_04280) cls 883270..884781 (+) 1512 WP_159719434.1 cardiolipin synthase -
  GRQ40_RS04285 (GRQ40_04285) - 885062..886276 (+) 1215 WP_159719435.1 competence protein CoiA -
  GRQ40_RS04290 (GRQ40_04290) pepF 886332..888146 (+) 1815 WP_159719436.1 oligoendopeptidase F Regulator
  GRQ40_RS04295 (GRQ40_04295) - 888167..888358 (-) 192 WP_044745743.1 hypothetical protein -
  GRQ40_RS04300 (GRQ40_04300) - 888645..889532 (-) 888 WP_044745744.1 ClpXP adapter SpxH family protein -
  GRQ40_RS04305 (GRQ40_04305) - 889525..889935 (-) 411 WP_044745745.1 globin -
  GRQ40_RS04310 (GRQ40_04310) - 890043..890663 (-) 621 WP_159719437.1 lytic transglycosylase domain-containing protein -
  GRQ40_RS04315 (GRQ40_04315) - 890660..891250 (-) 591 WP_066148304.1 CYTH domain-containing protein -
  GRQ40_RS04320 (GRQ40_04320) - 891385..891759 (+) 375 WP_066148305.1 hypothetical protein -
  GRQ40_RS04325 (GRQ40_04325) - 891777..892415 (+) 639 WP_066148307.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69753.74 Da        Isoelectric Point: 5.1000

>NTDB_id=411196 GRQ40_RS04290 WP_159719436.1 886332..888146(+) (pepF) [Anoxybacillus sp. PDR2]
MTEKQAVKSLPKRNEIPIEETWRLEDIFPSDEAWEQEFQEVKKMLPKLADYQGRLGESADVFYEALQYQDHLSLRLDKLY
TYAHMRYDQDTTNSFYQSLNDRIKGLYSEASSAMAFIVPEILAIDEAKVKSFLKEKEELKLYEHALDEINRQRPHVLSAK
EEALLAQAAEVMASSSNTFGMLNNADLKFPAIIDENGEEVEVTHGRYIRFLESEDRRVRRDAFKAVYKTYGKYKNTFAST
LSGAVKKDNFFARVRQYQSARQAALSSNNIPESVYDNLVETVNKNLDLLHRYVRLRKKALGLEELHMYDLYTPLVKNVKM
EVTYEEAKQYLLKGLAPLGEEYVSIVKEGLENRWVDVRENVGKRSGAYSSGAYGTNPYILLNWQDNVNNLFTLAHEFGHS
VHSYYTRKTQPYPYGSYSIFVAEVASTCNEALLNDYLLKTIEEEDKRLYLLNHYLEGFRGTVFRQTMFAEFEHMVHVKAQ
QGEALTAESLTSMYYELNKKYFGSDVVVDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVQRYVEFL
KAGSSDYPIEVLKKAGVDMATAKPIEEACQVFAQKLEEMEQLLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=411196 GRQ40_RS04290 WP_159719436.1 886332..888146(+) (pepF) [Anoxybacillus sp. PDR2]
ATGACTGAAAAGCAAGCGGTAAAATCATTGCCAAAGCGCAATGAAATTCCTATCGAGGAAACGTGGCGGCTTGAAGATAT
TTTTCCAAGCGATGAGGCATGGGAGCAAGAATTTCAAGAAGTCAAAAAAATGCTGCCCAAGCTCGCTGATTATCAAGGGC
GTCTAGGAGAATCCGCCGATGTTTTCTATGAGGCGCTGCAATATCAGGATCATTTGTCGCTGCGTCTTGACAAGCTGTAT
ACGTATGCGCATATGCGCTACGACCAAGATACCACCAACTCTTTTTACCAAAGCTTAAATGATCGGATTAAGGGGCTTTA
TAGCGAAGCATCAAGCGCAATGGCTTTTATCGTGCCAGAAATTTTGGCGATTGATGAGGCGAAAGTGAAGTCATTTCTTA
AGGAAAAAGAGGAACTTAAGCTTTATGAACATGCTTTAGATGAAATTAACCGACAGCGGCCGCATGTGCTGAGCGCAAAG
GAAGAGGCGTTGCTTGCTCAAGCGGCGGAGGTGATGGCCTCATCAAGCAATACATTTGGGATGCTAAATAACGCCGATTT
AAAATTCCCGGCCATTATTGACGAAAATGGGGAAGAAGTTGAAGTGACGCACGGACGTTACATACGCTTTCTTGAAAGTG
AAGATCGCCGCGTTCGCCGTGATGCGTTTAAAGCTGTGTATAAAACATACGGAAAATATAAAAACACTTTTGCCAGCACG
CTTAGTGGCGCAGTGAAAAAAGATAACTTTTTTGCCCGCGTGCGCCAGTATCAATCTGCGCGTCAAGCGGCTTTAAGCAG
CAATAATATTCCGGAGAGCGTTTATGATAATCTTGTGGAGACTGTAAATAAAAATTTGGATTTGCTGCACCGATATGTTC
GATTACGCAAAAAAGCTCTAGGGCTTGAGGAACTTCATATGTACGATTTGTATACTCCTCTGGTGAAAAATGTAAAAATG
GAAGTGACATATGAAGAAGCAAAGCAGTATCTACTAAAAGGACTAGCTCCACTTGGCGAAGAATATGTAAGCATCGTGAA
AGAAGGATTGGAAAATCGTTGGGTTGACGTGCGTGAAAATGTAGGAAAAAGAAGTGGAGCTTATTCTTCAGGAGCTTATG
GAACCAATCCATATATTTTGCTGAACTGGCAGGATAATGTCAATAATTTATTTACGCTTGCCCATGAGTTTGGCCATTCT
GTCCACAGCTATTATACGCGGAAAACGCAGCCATATCCATATGGCAGCTACTCGATTTTCGTAGCGGAAGTCGCTTCGAC
ATGCAATGAAGCATTGCTCAATGATTATTTGCTAAAAACGATTGAAGAGGAAGACAAACGGTTGTATTTGCTCAATCATT
ATTTGGAAGGTTTTCGCGGCACTGTATTTCGGCAAACGATGTTTGCTGAGTTTGAGCATATGGTTCATGTAAAAGCCCAA
CAGGGAGAAGCGTTAACAGCCGAATCACTGACATCTATGTATTATGAGCTCAATAAAAAATATTTTGGAAGCGATGTGGT
TGTTGATGAGGAAATCGGTTTAGAATGGGCGCGAATTCCGCATTTTTACTACAATTATTATGTATATCAATATGCGACAG
GCTTTAGTGCGGCTACAGCGTTGAGCAAGCAAATTTTAGAAGAAGGAGAGCCGGCTGTTCAACGGTACGTTGAGTTTTTA
AAAGCCGGCAGCTCTGATTATCCGATTGAGGTGCTGAAGAAGGCTGGAGTGGATATGGCGACAGCTAAGCCAATCGAGGA
AGCGTGCCAAGTGTTCGCGCAAAAACTGGAAGAGATGGAACAGCTGCTGTCGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.155

98.013

0.482

Multiple sequence alignment