Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GSR61_RS00040 Genome accession   NZ_CP047142
Coordinates   9266..9784 (+) Length   172 a.a.
NCBI ID   WP_013085589.1    Uniprot ID   A0A109DE21
Organism   Lactobacillus crispatus strain C25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4266..14784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSR61_RS00030 (GSR61_00030) gyrA 6222..8702 (+) 2481 WP_161903458.1 DNA gyrase subunit A -
  GSR61_RS00035 (GSR61_00035) rpsF 8920..9216 (+) 297 WP_005729269.1 30S ribosomal protein S6 -
  GSR61_RS00040 (GSR61_00040) ssb 9266..9784 (+) 519 WP_013085589.1 single-stranded DNA-binding protein Machinery gene
  GSR61_RS00045 (GSR61_00045) rpsR 9812..10048 (+) 237 WP_003549366.1 30S ribosomal protein S18 -
  GSR61_RS00050 (GSR61_00050) - 10107..10577 (-) 471 WP_013085590.1 hypothetical protein -
  GSR61_RS00055 (GSR61_00055) - 10561..10914 (-) 354 WP_065991144.1 helix-turn-helix domain-containing protein -
  GSR61_RS00060 (GSR61_00060) - 11248..11565 (+) 318 WP_023487822.1 hypothetical protein -
  GSR61_RS00065 (GSR61_00065) - 11762..12988 (-) 1227 WP_065991185.1 IS110 family transposase -
  GSR61_RS00070 (GSR61_00070) - 13255..14253 (+) 999 WP_023487823.1 helveticin J family class III bacteriocin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18649.18 Da        Isoelectric Point: 4.7317

>NTDB_id=410967 GSR61_RS00040 WP_013085589.1 9266..9784(+) (ssb) [Lactobacillus crispatus strain C25]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNAGSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=410967 GSR61_RS00040 WP_013085589.1 9266..9784(+) (ssb) [Lactobacillus crispatus strain C25]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTGGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109DE21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.571

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.273

100

0.535

Multiple sequence alignment