Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GSR62_RS04430 Genome accession   NZ_CP047141
Coordinates   885445..887124 (+) Length   559 a.a.
NCBI ID   WP_066023868.1    Uniprot ID   -
Organism   Ligilactobacillus animalis strain P38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 880445..892124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSR62_RS04400 (GSR62_04395) folD 880667..881515 (+) 849 WP_035447934.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  GSR62_RS04405 (GSR62_04400) xseA 881515..882858 (+) 1344 WP_010688946.1 exodeoxyribonuclease VII large subunit -
  GSR62_RS04410 (GSR62_04405) - 882855..883082 (+) 228 WP_010688947.1 exodeoxyribonuclease VII small subunit -
  GSR62_RS04415 (GSR62_04410) - 883187..884065 (+) 879 WP_035447936.1 polyprenyl synthetase family protein -
  GSR62_RS04420 (GSR62_04415) - 884080..884907 (+) 828 WP_035447937.1 TlyA family RNA methyltransferase -
  GSR62_RS04425 (GSR62_04420) - 884928..885386 (+) 459 WP_035447941.1 arginine repressor -
  GSR62_RS04430 (GSR62_04425) recN 885445..887124 (+) 1680 WP_066023868.1 DNA repair protein RecN Machinery gene
  GSR62_RS04435 (GSR62_04430) lexA 887209..887832 (-) 624 WP_010688954.1 transcriptional repressor LexA -
  GSR62_RS04440 (GSR62_04435) - 887997..888293 (+) 297 WP_010688955.1 DUF896 domain-containing protein -
  GSR62_RS04445 (GSR62_04440) - 888374..888598 (+) 225 WP_004047611.1 YneF family protein -
  GSR62_RS04450 (GSR62_04445) - 888647..889273 (-) 627 WP_035447947.1 lysophospholipid acyltransferase family protein -
  GSR62_RS04455 (GSR62_04450) - 889480..890238 (+) 759 WP_179854468.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GSR62_RS04460 (GSR62_04455) - 890222..890509 (+) 288 WP_010688961.1 GIY-YIG nuclease family protein -
  GSR62_RS04465 (GSR62_04460) - 890650..891645 (+) 996 WP_029507313.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 63074.26 Da        Isoelectric Point: 4.5447

>NTDB_id=410955 GSR62_RS04430 WP_066023868.1 885445..887124(+) (recN) [Ligilactobacillus animalis strain P38]
MLQELMIRDFAIIEQLTVDFGTNMTVLTGETGAGKSIIIDALGLLAGGRGSSDFIRKGANKSLLQGQFTIPKATRTYELL
DEFGIECEDDVLILQRDIYRSGKNVCRINGVLVNLGTLRQVGQTLIDIHGQNEHQELMDPERHLALVDNYQPEILAKLTQ
YQALYANYRRLSQALEQREKNAHEWAQRLDMLQFQVNEISEAQLHEGEEEELQEQKRQLDNYQTIHHALEMSYQALNGEE
LDVMSVLGNVMSELEDVAEFNSELAAIYEKVSDAFYNLQDAAHEVSGQLSDLEWDEELLNSIEARLETIHQLKRKYGDSI
EMILAYYDKIKHELETMQQSDENLEQQVEQVKEAHAKAKELALEISELRKQTAKRLENEIHQQLSALYMDKAVFEVRFLP
ENGQLTETGLDRVEFYIQTNPGEEMGALAKIASGGELSRIMLALKTIFAQNKGVTSIIFDEVDTGVSGRVAQAIAEKISQ
IATNSQVLCITHLPQVAAVADHHYFIAKHVANGRTETSLTILNDKERIEELARMLSGSSITTLTLEHAEELLKMAKASK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=410955 GSR62_RS04430 WP_066023868.1 885445..887124(+) (recN) [Ligilactobacillus animalis strain P38]
TTGTTACAAGAATTAATGATCCGTGATTTTGCAATTATTGAGCAGTTGACCGTTGATTTTGGAACGAATATGACGGTCTT
GACTGGTGAAACAGGGGCTGGTAAATCTATTATTATCGATGCTTTAGGACTACTAGCAGGTGGACGTGGCTCGAGTGATT
TTATCCGCAAGGGAGCTAATAAGTCGTTACTCCAGGGGCAATTTACCATTCCTAAAGCGACGCGCACATATGAGCTTTTA
GATGAATTTGGGATCGAATGTGAAGATGACGTTTTGATCTTACAACGCGATATTTATCGCAGTGGTAAAAATGTTTGCCG
GATAAATGGTGTTTTGGTTAATTTGGGCACATTACGGCAGGTAGGGCAAACCTTGATCGATATCCACGGACAAAATGAGC
ATCAAGAATTGATGGATCCTGAGCGCCATTTAGCCCTAGTTGATAATTATCAGCCTGAGATCCTAGCTAAATTGACACAA
TACCAGGCACTTTATGCCAATTATCGTCGCCTTTCGCAAGCACTGGAGCAACGCGAGAAAAATGCGCATGAGTGGGCTCA
AAGACTCGATATGTTACAATTTCAAGTTAATGAGATCAGTGAGGCGCAGTTACACGAGGGCGAAGAAGAAGAGCTCCAAG
AACAAAAACGTCAATTAGATAATTATCAAACGATCCATCACGCCTTAGAGATGAGTTATCAAGCACTAAATGGTGAAGAA
TTAGATGTGATGAGCGTTCTAGGAAATGTCATGAGTGAATTAGAAGATGTGGCTGAGTTCAATTCTGAATTAGCCGCGAT
CTACGAAAAGGTTTCTGATGCTTTTTATAATCTGCAAGATGCAGCACATGAAGTTTCAGGGCAATTAAGTGATCTGGAGT
GGGATGAAGAACTGCTAAATTCAATTGAGGCACGGCTCGAAACGATCCATCAGCTCAAGCGTAAATATGGTGATTCGATC
GAAATGATCTTGGCTTATTACGATAAGATAAAACACGAGCTTGAAACGATGCAACAAAGCGATGAAAACTTAGAGCAGCA
AGTCGAACAGGTCAAAGAAGCTCACGCCAAGGCAAAAGAATTAGCACTAGAGATCAGCGAGTTACGCAAACAGACTGCTA
AACGCCTTGAAAATGAGATACATCAGCAATTAAGTGCGCTTTATATGGATAAAGCTGTTTTTGAAGTACGTTTTTTACCA
GAGAACGGGCAATTGACTGAGACTGGGCTTGATCGGGTCGAATTTTACATTCAAACTAACCCCGGAGAAGAAATGGGCGC
TTTAGCAAAGATCGCTTCTGGTGGTGAATTGTCGCGGATCATGCTCGCGCTAAAGACGATCTTTGCCCAAAATAAGGGTG
TGACGAGTATTATTTTCGATGAGGTCGATACTGGAGTCAGTGGGCGCGTCGCCCAGGCAATCGCAGAAAAGATCAGTCAG
ATCGCAACTAATTCGCAAGTGTTGTGTATCACGCATTTACCACAGGTCGCAGCTGTGGCAGACCATCACTACTTTATTGC
TAAGCATGTAGCTAATGGTCGGACTGAAACTTCGCTGACGATCTTAAACGATAAGGAACGGATCGAAGAATTAGCCCGAA
TGTTATCGGGTTCTTCGATCACGACTTTGACGCTAGAACATGCAGAAGAATTGCTAAAAATGGCTAAGGCAAGTAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.314

100

0.488

Multiple sequence alignment