Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SGPB_RS08880 Genome accession   NC_015600
Coordinates   1798899..1799414 (-) Length   171 a.a.
NCBI ID   WP_003066357.1    Uniprot ID   -
Organism   Streptococcus pasteurianus ATCC 43144     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1793899..1804414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS08850 (SGPB_1734) - 1795329..1796273 (+) 945 WP_003066347.1 magnesium transporter CorA family protein -
  SGPB_RS08855 (SGPB_1735) - 1796576..1797232 (+) 657 WP_013852223.1 DUF1129 domain-containing protein -
  SGPB_RS08860 (SGPB_1736) - 1797277..1797726 (-) 450 WP_013852224.1 hypothetical protein -
  SGPB_RS08865 (SGPB_1737) - 1797728..1797937 (-) 210 WP_003066353.1 helix-turn-helix domain-containing protein -
  SGPB_RS08870 (SGPB_1738) - 1797940..1798464 (-) 525 WP_013852225.1 DUF2975 domain-containing protein -
  SGPB_RS08875 (SGPB_1739) rpsR 1798599..1798838 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  SGPB_RS08880 (SGPB_1740) ssbA 1798899..1799414 (-) 516 WP_003066357.1 single-stranded DNA-binding protein Machinery gene
  SGPB_RS08885 (SGPB_1741) rpsF 1799426..1799716 (-) 291 WP_003066359.1 30S ribosomal protein S6 -
  SGPB_RS11500 (SGPB_1742) - 1799959..1800216 (-) 258 WP_013852226.1 hypothetical protein -
  SGPB_RS08895 (SGPB_1743) - 1800348..1800896 (-) 549 WP_013852227.1 biotin transporter BioY -
  SGPB_RS08900 (SGPB_1744) bioD 1800896..1801564 (-) 669 WP_003066365.1 dethiobiotin synthase -
  SGPB_RS08905 (SGPB_1745) bioB 1801557..1802492 (-) 936 WP_009854904.1 biotin synthase BioB -
  SGPB_RS08910 (SGPB_1746) ahpF 1802770..1804308 (-) 1539 WP_013852228.1 alkyl hydroperoxide reductase subunit F -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18919.49 Da        Isoelectric Point: 4.7187

>NTDB_id=41091 SGPB_RS08880 WP_003066357.1 1798899..1799414(-) (ssbA) [Streptococcus pasteurianus ATCC 43144]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADNFQILESRATREGQSGGSYNGGFNNNNSSFGGSSNDGGFSSQSSQSQTPNFGRDESPFGNSN
PMDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=41091 SGPB_RS08880 WP_003066357.1 1798899..1799414(-) (ssbA) [Streptococcus pasteurianus ATCC 43144]
ATGATTAATAATGTAGTACTTGTCGGTCGTATGACTCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCTGTTGC
CACATTTACACTTGCTGTAAATCGCAACTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCCAACAGGCAGAAAATCTGTCTAATTGGGCTAAAAAAGGCACATTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGTGTTTACGTAACAGAGATTGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCATATAACGGTGGATTCAACAATAACAATTCATCATTTGGTGGCTCATCAAACG
ACGGTGGTTTCTCATCACAATCTTCACAATCACAAACACCTAACTTTGGTCGTGATGAAAGCCCATTTGGCAATTCAAAT
CCAATGGACATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.222

100

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.596

Multiple sequence alignment