Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   F3K97_RS00485 Genome accession   NZ_CP047129
Coordinates   124807..126651 (+) Length   614 a.a.
NCBI ID   WP_117762336.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain ZJ2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 119807..131651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K97_RS00460 (F3K97_00460) thiF 119878..120591 (-) 714 WP_026646632.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  F3K97_RS00465 (F3K97_00465) thiS 120644..120838 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  F3K97_RS00470 (F3K97_00470) - 121274..122242 (+) 969 WP_039774629.1 aldo/keto reductase -
  F3K97_RS00475 (F3K97_00475) - 122426..122917 (+) 492 WP_003807375.1 MarR family winged helix-turn-helix transcriptional regulator -
  F3K97_RS00480 (F3K97_00480) rcrP 123044..124795 (+) 1752 WP_117762335.1 ABC transporter ATP-binding protein Regulator
  F3K97_RS00485 (F3K97_00485) rcrQ 124807..126651 (+) 1845 WP_117762336.1 ABC transporter ATP-binding protein Regulator
  F3K97_RS00490 (F3K97_00490) - 126822..127802 (+) 981 WP_021912920.1 aldo/keto reductase -
  F3K97_RS00495 (F3K97_00495) - 127887..128939 (-) 1053 WP_117762337.1 FAD:protein FMN transferase -
  F3K97_RS00500 (F3K97_00500) - 129379..131166 (+) 1788 WP_117762338.1 FTR1 family iron permease -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 67722.53 Da        Isoelectric Point: 6.6583

>NTDB_id=410822 F3K97_RS00485 WP_117762336.1 124807..126651(+) (rcrQ) [Bifidobacterium adolescentis strain ZJ2]
MPRGPMGRGRGPVEKPKDFGGVMKKLMRFCRHYIPVMIFALILGAAGTVCQIIGPDKLKDMTNEITKGLPAMVHGKPVMN
SIDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQQLREAISQKINRLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSVTLFFGALIMMFYNNVTMTLCAIGSALLGLIIMGVIMKVSQKYFTRQQVALGDVNGHVEEMYTGHTVV
KAYCGEERSIEQFEKYNNDLYVSGWKSQFLSGLMMPIMNFVGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFGFLDEPELADESGKRALLGVDADGKPQPVRGDVEFSHVRFGYDPDKTIINDFSASVKA
GQKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGIDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKDVTDEQ
IVAACKAVGLHHYIMSLPNGYDTVLDDKASLSQGQRQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGR
TSFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKGGFYADIYNSQFTLAE

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=410822 F3K97_RS00485 WP_117762336.1 124807..126651(+) (rcrQ) [Bifidobacterium adolescentis strain ZJ2]
ATGCCTAGAGGACCAATGGGACGCGGGCGCGGGCCCGTGGAGAAGCCGAAGGATTTCGGCGGTGTGATGAAGAAGCTGAT
GCGATTCTGCCGGCACTACATTCCGGTGATGATTTTCGCGCTGATACTGGGTGCGGCCGGCACGGTTTGCCAGATTATCG
GCCCGGACAAGCTTAAGGACATGACCAACGAGATTACGAAGGGTCTGCCTGCCATGGTGCACGGCAAGCCCGTCATGAAC
TCGATCGACATGGATGCGGTCTCACGTATCGCATGGCTGCTTGTCGCGCTGTACGTCGGGTACGCGCTGCTGAGTTACCT
GCAGAGCTGGCTGATGGCCAACGTCACGCAACGCACGGCACAGCAGCTACGTGAGGCGATCAGCCAGAAAATCAATCGCC
TGCCGCTGAAATATTTCGACAAAGTCAGCTACGGCGACGTGCTGAGCCGCATCACCAACGACGTCGACGCGATCGGACAG
ACGCTCGGCCAGTCGGTCGGCTCGCTCATCACATCGGTCACGCTGTTCTTCGGCGCGCTCATCATGATGTTCTACAACAA
CGTGACCATGACGCTGTGCGCCATCGGCTCCGCGCTGCTCGGCCTGATCATCATGGGCGTGATCATGAAGGTGTCGCAGA
AGTACTTCACCCGCCAGCAGGTGGCGCTCGGCGACGTCAACGGCCACGTCGAGGAAATGTACACCGGCCACACCGTGGTC
AAGGCATACTGCGGCGAGGAACGCTCCATCGAGCAGTTCGAGAAGTACAACAACGACCTGTACGTGTCCGGCTGGAAGAG
CCAGTTCCTGTCCGGCCTGATGATGCCGATCATGAACTTCGTCGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTCGGCG
CGGTGCTCGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCG
CTCTCCCAGTTCGCGCAGGCCTTCCAGAACCTGCAGCGTTGCGCGGCTGCCTCCGAGCGCGTGTTCGGCTTCCTTGACGA
GCCGGAACTGGCCGACGAATCCGGCAAGCGGGCGTTGCTCGGCGTTGACGCGGACGGCAAGCCGCAGCCGGTGCGCGGCG
ACGTGGAATTCAGCCATGTGCGTTTCGGCTACGATCCGGACAAGACCATCATCAACGACTTCTCCGCGTCCGTGAAAGCC
GGCCAGAAGGTGGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTACGAGAT
TTCCGGTGGCACGATTTCGATCGACGGCATCGACACCAAGTCCGTACCGCGTTGGAACGTGCACGACCAGTTCTCCATGG
TGCTGCAGGACACGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGAAGGACGTCACCGACGAGCAG
ATCGTGGCCGCATGCAAGGCCGTCGGCCTGCACCACTACATCATGTCGTTGCCGAACGGCTACGACACCGTGCTCGACGA
CAAGGCGTCGCTTTCCCAGGGCCAGCGCCAGCTGCTGACGATCGCCCGCGCGATGGTGGAGGACGCGCCGATCCTGATCC
TCGACGAGGCCACCTCCTCGGTCGATACACGCACCGAGGAGCTGATCCAGAAGGCGATGGACGCGCTGACCGTGGGCCGC
ACGAGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGACGCCGACATGATCCTGGTGATGAATGGCGGCGACATCGT
GGAACGCGGCACGCACGAGGAACTGCTCGCCAAGGGCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGGCCG
AGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-321)

ABC transporter (ABC_tran)

(392-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.822

96.254

0.528

Multiple sequence alignment