Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   F3K97_RS00480 Genome accession   NZ_CP047129
Coordinates   123044..124795 (+) Length   583 a.a.
NCBI ID   WP_117762335.1    Uniprot ID   A0A6I6QWF4
Organism   Bifidobacterium adolescentis strain ZJ2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 118044..129795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K97_RS00455 (F3K97_00455) - 118785..119699 (-) 915 WP_201290135.1 thiazole synthase -
  F3K97_RS00460 (F3K97_00460) thiF 119878..120591 (-) 714 WP_026646632.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  F3K97_RS00465 (F3K97_00465) thiS 120644..120838 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  F3K97_RS00470 (F3K97_00470) - 121274..122242 (+) 969 WP_039774629.1 aldo/keto reductase -
  F3K97_RS00475 (F3K97_00475) - 122426..122917 (+) 492 WP_003807375.1 MarR family winged helix-turn-helix transcriptional regulator -
  F3K97_RS00480 (F3K97_00480) rcrP 123044..124795 (+) 1752 WP_117762335.1 ABC transporter ATP-binding protein Regulator
  F3K97_RS00485 (F3K97_00485) rcrQ 124807..126651 (+) 1845 WP_117762336.1 ABC transporter ATP-binding protein Regulator
  F3K97_RS00490 (F3K97_00490) - 126822..127802 (+) 981 WP_021912920.1 aldo/keto reductase -
  F3K97_RS00495 (F3K97_00495) - 127887..128939 (-) 1053 WP_117762337.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64410.39 Da        Isoelectric Point: 5.0976

>NTDB_id=410821 F3K97_RS00480 WP_117762335.1 123044..124795(+) (rcrP) [Bifidobacterium adolescentis strain ZJ2]
MLRIVRYLSKAEIGQMLVALVSIVGQIWLDLTLPDYMADITQLVETPGSEMHDIWVAGGKMLLVSLGSAACAVVTGFIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKAPIMAVWAVCKIAGKGFDWTLA
TGIAVAILLVVIAVLMNFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTEANKELTETQLFTNRAMAI
MMPLMNTVMNGLMLAVYWIGAYLIDAADAVDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTE
PMVTDGTQDAGKPGEEGEIEFRNVSFAYPDSRHAMLEGVNFKAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVDVRDYTLKALRDKIGYVPQQSFLFKGTIASNVAYGDTDRDDDTVRRACDVAQATEFIDKKQKKYDSGISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEKEAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHEE
LLDTCEVYRQIAESQLSEDELKR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=410821 F3K97_RS00480 WP_117762335.1 123044..124795(+) (rcrP) [Bifidobacterium adolescentis strain ZJ2]
ATGCTTCGCATCGTACGATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCGCTGGTCAGCATCGTCGGTCAGAT
CTGGCTTGACCTGACCCTGCCGGATTATATGGCCGACATCACGCAGCTCGTCGAAACCCCCGGCAGCGAAATGCACGACA
TCTGGGTGGCCGGCGGCAAAATGCTGCTCGTCTCGCTCGGCTCGGCGGCCTGCGCCGTCGTCACCGGCTTCATCGCCGCG
CGCGTGGGCGCCTCGTTCAGCCAGCGCCTGCGTTCGCTCGAATTCAACAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCGTCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTCA
TGATGATCGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCAGGAAAGGGCTTCGATTGGACGCTCGCA
ACCGGCATCGCCGTGGCCATCCTGCTGGTGGTCATCGCCGTGCTCATGAACTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAACATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCGTACAACGCCGAGG
ACTACCAGGAAGCCAAGTTCACCGAAGCCAACAAGGAACTCACCGAGACCCAGCTGTTCACCAACCGTGCCATGGCCATC
ATGATGCCGTTGATGAACACCGTCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCGTACCTTATCGACGCTGC
CGACGCCGTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTCATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGAGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAG
CCGATGGTCACCGACGGCACGCAGGACGCGGGCAAGCCGGGCGAGGAAGGCGAAATCGAATTCCGCAATGTGAGCTTCGC
CTACCCCGACTCGCGTCACGCCATGCTCGAAGGCGTCAATTTCAAGGCGAAGAAGGGTCAGACGGTGGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCCCTCATCAACCTCGTGCCGCGTTTCTACGACGCCACGCAGGGCGAGGTGCTGGTCGAC
GGCGTGGATGTGCGCGACTACACGCTCAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGAACGATCGCCAGCAACGTCGCGTACGGAGATACGGACCGCGACGACGACACCGTGCGCCGCGCATGCGACGTCGCGC
AGGCGACGGAATTCATCGACAAAAAGCAGAAGAAGTACGATTCCGGCATTTCGCAGGGCGGTTCCAACGTTTCGGGCGGG
CAGAAGCAGCGTCTGTCGATCGCACGCGCCGTCTACCGTCATCCGGAAATCCTGATCTTCGACGATTCCTTCTCCGCGCT
CGACTTCAAAACCGACCGTGCCGTACGTGACGCGCTCGAAAAGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATCATGAATGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTGGTCGGCCAGGGCACGCACGAGGAA
CTGCTCGACACGTGCGAAGTGTATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAGCTGAAGCGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(356-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6QWF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.586

100

0.518

Multiple sequence alignment