Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   GE573_RS08035 Genome accession   NZ_CP047119
Coordinates   1554634..1554753 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain AK-0     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1549634..1559753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS08015 - 1549984..1550496 (+) 513 Protein_1591 bacteriocin biosynthesis protein AlbG -
  GE573_RS08020 (GE573_01601) - 1550503..1551879 (-) 1377 WP_190664657.1 YncE family protein -
  GE573_RS08025 (GE573_01602) - 1551919..1553274 (-) 1356 WP_190664658.1 YncE family protein -
  GE573_RS08030 (GE573_01603) rapF 1553505..1554650 (+) 1146 WP_015240777.1 tetratricopeptide repeat protein Regulator
  GE573_RS08035 (GE573_01604) phrF 1554634..1554753 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  GE573_RS08040 (GE573_01605) - 1554951..1555154 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  GE573_RS08045 (GE573_01606) - 1555168..1555371 (+) 204 WP_007407641.1 hypothetical protein -
  GE573_RS08050 (GE573_01607) - 1555406..1555591 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  GE573_RS08055 (GE573_01608) - 1555778..1556059 (+) 282 WP_007407643.1 hypothetical protein -
  GE573_RS08060 (GE573_01609) - 1556103..1556615 (+) 513 WP_053573958.1 stage II sporulation protein M -
  GE573_RS08065 (GE573_01611) - 1557206..1557424 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  GE573_RS08070 (GE573_01612) speB 1557592..1558464 (-) 873 WP_190664659.1 agmatinase -
  GE573_RS08075 (GE573_01613) speE 1558523..1559353 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=410674 GE573_RS08035 WP_015240778.1 1554634..1554753(+) (phrF) [Bacillus velezensis strain AK-0]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=410674 GE573_RS08035 WP_015240778.1 1554634..1554753(+) (phrF) [Bacillus velezensis strain AK-0]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment