Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GE573_RS05035 Genome accession   NZ_CP047119
Coordinates   966038..966682 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain AK-0     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 961038..971682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS05000 (GE573_00995) - 962223..962654 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  GE573_RS05005 (GE573_00996) - 962654..962995 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  GE573_RS05010 (GE573_00997) - 962988..964469 (+) 1482 WP_060561879.1 Na+/H+ antiporter subunit D -
  GE573_RS05015 (GE573_00998) - 964475..964951 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  GE573_RS05020 (GE573_00999) - 964951..965235 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  GE573_RS05025 (GE573_01000) mnhG 965219..965593 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  GE573_RS05030 (GE573_01001) - 965633..966016 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  GE573_RS05035 (GE573_01002) comA 966038..966682 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  GE573_RS05040 (GE573_01003) comP 966763..969063 (-) 2301 WP_032867184.1 histidine kinase Regulator
  GE573_RS05045 (GE573_01004) comX 969077..969250 (-) 174 WP_012118314.1 competence pheromone ComX -
  GE573_RS05050 (GE573_01005) - 969219..970079 (-) 861 WP_157774448.1 polyprenyl synthetase family protein -
  GE573_RS05055 (GE573_01006) degQ 970287..970427 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  GE573_RS05060 (GE573_01007) - 970892..971233 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=410661 GE573_RS05035 WP_003152052.1 966038..966682(-) (comA) [Bacillus velezensis strain AK-0]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=410661 GE573_RS05035 WP_003152052.1 966038..966682(-) (comA) [Bacillus velezensis strain AK-0]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAGCAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment