Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   H1D55_RS13220 Genome accession   NZ_CP059474
Coordinates   2830829..2831464 (-) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain M175-3     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2825829..2836464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS13205 - 2826617..2827801 (+) 1185 WP_000939110.1 S41 family peptidase -
  H1D55_RS13210 - 2827805..2829226 (-) 1422 WP_000840559.1 sigma-54-dependent transcriptional regulator -
  H1D55_RS13215 pilS 2829250..2830818 (-) 1569 WP_001160331.1 sensor histidine kinase Regulator
  H1D55_RS13220 letA 2830829..2831464 (-) 636 WP_000633799.1 response regulator transcription factor GacA Regulator
  H1D55_RS13225 pbpG 2831677..2832723 (+) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  H1D55_RS13230 thrC 2832832..2833971 (-) 1140 WP_000063594.1 threonine synthase -
  H1D55_RS13235 - 2834027..2835328 (-) 1302 WP_000805827.1 homoserine dehydrogenase -
  H1D55_RS13240 - 2835573..2836388 (-) 816 WP_000011163.1 DsbC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=410580 H1D55_RS13220 WP_000633799.1 2830829..2831464(-) (letA) [Acinetobacter baumannii strain M175-3]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=410580 H1D55_RS13220 WP_000633799.1 2830829..2831464(-) (letA) [Acinetobacter baumannii strain M175-3]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCGGGCATCGGTGGTGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTTGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCATTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGCGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55
  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55

Multiple sequence alignment