Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   D5E69_RS19260 Genome accession   NZ_CP047095
Coordinates   3705796..3707112 (-) Length   438 a.a.
NCBI ID   WP_249931521.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain 151-25     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3700796..3712112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5E69_RS19230 (D5E69_19245) flgL 3701272..3702177 (-) 906 WP_159130063.1 flagellar hook-associated protein FlgL -
  D5E69_RS19235 (D5E69_19250) flgK 3702193..3703770 (-) 1578 WP_159130064.1 flagellar hook-associated protein FlgK -
  D5E69_RS19240 (D5E69_19255) - 3703792..3704289 (-) 498 WP_148796286.1 flagellar protein FlgN -
  D5E69_RS19245 (D5E69_19260) flgM 3704307..3704573 (-) 267 WP_148796283.1 flagellar biosynthesis anti-sigma factor FlgM -
  D5E69_RS19250 (D5E69_19265) - 3704662..3705075 (-) 414 WP_148796282.1 TIGR03826 family flagellar region protein -
  D5E69_RS19255 (D5E69_19270) - 3705135..3705626 (-) 492 WP_249931520.1 ComF family protein -
  D5E69_RS19260 (D5E69_19275) comFA 3705796..3707112 (-) 1317 WP_249931521.1 DEAD/DEAH box helicase Machinery gene
  D5E69_RS19265 (D5E69_19280) - 3707377..3708150 (-) 774 WP_347566711.1 LD-carboxypeptidase -
  D5E69_RS23715 - 3708074..3708286 (-) 213 WP_249931522.1 LD-carboxypeptidase -
  D5E69_RS19270 (D5E69_19285) - 3708703..3709553 (-) 851 Protein_3791 DegV family protein -
  D5E69_RS19275 (D5E69_19290) - 3709705..3710622 (-) 918 WP_159130067.1 DMT family transporter -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 49067.62 Da        Isoelectric Point: 9.0093

>NTDB_id=410291 D5E69_RS19260 WP_249931521.1 3705796..3707112(-) (comFA) [Rossellomorea marisflavi strain 151-25]
MDEILFDGALVHAHYRHGYVSYGPGVQAGICQRCGNGSRGSFGEFECARCGKSCRYCRNCLMMGRVSECTPLLTWNGPPP
RTKEDVFFAWEGTLSPAQQEASTELVTAVKEDRDLLIWAVCGAGKTEVLFEGIHEAIRGGKRVCLATPRTDVILELSPRL
KKVFPETDLITLYGGSEERQSFGQIVLTTTHQLFRFKEAFDVMIVDEVDAFPYSFDSSLQFAVEKARKPSSSLIHLTATP
DGATQRECRSGRRHHFRIPARFHRHPIPSPRFAWCGNWQKSLEKGKIPPPLKKWMLQRLHTSTPALIFFPSVAIMNKALS
LFKAIHPLIESVHAQDPKRKEKVMRMRKFEMPILLTTTILERGVTIPGIDVAVLGAEETIFTESALVQISGRVGRSSDHP
GGDIVYFHHGKTGEMIKARAHINEMNREAGKRGLIDAR

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=410291 D5E69_RS19260 WP_249931521.1 3705796..3707112(-) (comFA) [Rossellomorea marisflavi strain 151-25]
ATGGATGAGATCCTGTTCGATGGGGCGCTCGTTCATGCGCATTATCGTCATGGATACGTATCATACGGTCCTGGTGTGCA
GGCTGGCATTTGTCAGCGCTGCGGGAACGGTTCGCGCGGAAGTTTTGGTGAGTTTGAATGCGCCCGCTGCGGGAAGTCAT
GCCGCTATTGCCGGAACTGTCTGATGATGGGGAGGGTGTCTGAGTGCACACCCCTCCTGACCTGGAATGGTCCGCCGCCC
CGTACGAAAGAGGATGTCTTCTTTGCCTGGGAAGGGACGCTGTCGCCTGCGCAACAGGAAGCATCCACCGAGCTCGTTAC
GGCGGTGAAAGAGGATCGGGACCTGCTGATATGGGCCGTGTGCGGTGCCGGGAAGACGGAGGTGCTGTTCGAGGGGATCC
ATGAGGCTATCAGGGGCGGTAAGCGCGTCTGCCTTGCAACTCCTAGAACCGATGTGATCCTGGAGCTTTCACCGCGTTTG
AAGAAGGTGTTTCCTGAGACGGATCTGATCACCCTGTACGGTGGTTCCGAGGAACGCCAGTCATTCGGGCAAATCGTGCT
GACCACCACGCATCAGCTGTTTCGGTTCAAGGAGGCATTCGATGTCATGATCGTCGACGAGGTCGATGCCTTTCCCTATT
CCTTCGATTCATCCCTTCAGTTCGCCGTGGAGAAAGCAAGAAAACCGTCCTCATCCCTCATCCACCTCACGGCAACGCCC
GATGGTGCAACGCAGCGGGAGTGCCGATCAGGACGGCGACACCACTTCAGGATCCCGGCCCGCTTTCATCGTCACCCCAT
TCCTTCTCCGCGCTTTGCCTGGTGTGGTAACTGGCAGAAATCATTGGAAAAAGGAAAGATCCCGCCGCCACTGAAGAAGT
GGATGCTGCAAAGATTGCATACCTCAACCCCAGCCCTCATCTTTTTCCCCAGCGTAGCCATCATGAACAAAGCGCTCTCC
CTGTTCAAAGCCATTCACCCCCTGATCGAGTCCGTCCATGCCCAAGATCCGAAACGAAAAGAGAAAGTCATGAGGATGCG
TAAGTTTGAGATGCCGATTCTCCTTACCACGACAATCCTGGAACGGGGAGTCACCATTCCTGGCATTGATGTGGCGGTCC
TCGGGGCAGAAGAAACCATCTTCACCGAGAGTGCCCTTGTGCAAATCTCGGGCCGGGTGGGGAGGAGTTCCGATCACCCG
GGCGGTGATATCGTGTACTTTCACCACGGCAAGACCGGTGAGATGATCAAAGCCCGTGCCCATATCAATGAAATGAACAG
GGAGGCTGGGAAAAGGGGGCTCATTGATGCCAGGTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(300-396)

Type III restriction enzyme, res subunit (ResIII)

(94-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.423

98.858

0.489
  comFA/cflA Streptococcus mitis NCTC 12261

38.821

92.922

0.361

Multiple sequence alignment