Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   D5E69_RS08585 Genome accession   NZ_CP047095
Coordinates   1627394..1628353 (+) Length   319 a.a.
NCBI ID   WP_148795701.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain 151-25     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1622394..1633353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5E69_RS08560 (D5E69_08560) - 1623391..1623939 (-) 549 WP_148794842.1 winged helix-turn-helix domain-containing protein -
  D5E69_RS08565 (D5E69_08565) - 1624110..1625378 (+) 1269 WP_053072402.1 MFS transporter -
  D5E69_RS08570 (D5E69_08570) - 1625438..1625620 (-) 183 WP_048004335.1 DUF2929 family protein -
  D5E69_RS08575 (D5E69_08575) - 1625846..1626586 (+) 741 WP_048004334.1 hypothetical protein -
  D5E69_RS08580 (D5E69_08580) - 1626605..1627324 (+) 720 WP_048004333.1 hypothetical protein -
  D5E69_RS08585 (D5E69_08585) med 1627394..1628353 (+) 960 WP_148795701.1 BMP family ABC transporter substrate-binding protein Regulator
  D5E69_RS08590 (D5E69_08590) comZ 1628350..1628532 (+) 183 WP_048004331.1 ComZ family protein Regulator
  D5E69_RS08595 (D5E69_08595) - 1628930..1629862 (+) 933 WP_048004330.1 beta-ketoacyl-ACP synthase III -
  D5E69_RS08600 (D5E69_08600) fabF 1629912..1631156 (+) 1245 WP_048004329.1 beta-ketoacyl-ACP synthase II -
  D5E69_RS08605 (D5E69_08605) - 1631436..1632011 (+) 576 WP_159129558.1 DUF2268 domain-containing protein -
  D5E69_RS08610 (D5E69_08610) - 1632117..1632866 (+) 750 WP_048004327.1 YjbA family protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 34940.95 Da        Isoelectric Point: 4.2924

>NTDB_id=410264 D5E69_RS08585 WP_148795701.1 1627394..1628353(+) (med) [Rossellomorea marisflavi strain 151-25]
MKFFHLSMILLLIGGCSAGNRSGEMDNAGLLVPETIDDGVWGTKGYQGLLGIQKEFDVKVYYKEGMKNDASVRQAIDDFE
KEDVNLVFGHGSEYSSIFNEVASEHKDMHLVSFNGDATQKNTTSLTFKGYAMGFFGGMTAASQTKTDRLGIIAAFSWQPE
VQGFIDGARYQNSEAEVLVDYTGHWDHAEVALERLDGLLDQDVDVVYPAGDGYNVAVIEKLKESGRYAIGYVSDQSDLGE
STVLTSTVQHADKLYELIAGKYTAGELESGNLEFDFQDGVISMGEFSPVIPDGFKSEMNQHIKAYVDTGKLPNGKEPPL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=410264 D5E69_RS08585 WP_148795701.1 1627394..1628353(+) (med) [Rossellomorea marisflavi strain 151-25]
ATGAAATTTTTTCACTTGTCGATGATCCTGTTGCTCATCGGGGGCTGCTCTGCCGGTAACCGGTCAGGAGAGATGGATAA
TGCCGGTCTGCTTGTACCGGAAACGATTGATGACGGCGTTTGGGGAACCAAGGGCTATCAAGGTCTTTTAGGCATCCAGA
AAGAGTTCGATGTGAAGGTTTATTATAAAGAAGGCATGAAGAACGATGCATCGGTCCGTCAAGCCATAGATGACTTTGAA
AAGGAAGACGTCAATCTTGTTTTCGGACATGGGAGTGAGTATTCTTCCATATTCAATGAGGTGGCATCAGAGCATAAAGA
CATGCATCTGGTGAGCTTCAACGGGGACGCCACGCAGAAAAATACTACCAGCCTGACTTTCAAAGGCTACGCTATGGGCT
TCTTTGGAGGGATGACGGCGGCTTCCCAGACCAAGACGGATCGACTCGGCATCATTGCCGCCTTTTCCTGGCAGCCGGAA
GTACAGGGGTTCATTGATGGAGCCAGATACCAAAACAGTGAAGCAGAGGTTCTGGTCGATTATACAGGTCACTGGGATCA
TGCCGAGGTTGCCCTCGAAAGGCTCGACGGACTCCTCGACCAGGATGTGGACGTTGTATATCCTGCTGGGGACGGGTATA
ATGTGGCTGTAATTGAAAAGCTCAAGGAATCAGGCCGGTATGCGATCGGGTATGTGAGCGACCAATCAGACCTTGGGGAA
TCAACGGTGCTGACGAGTACGGTCCAGCATGCCGACAAATTGTATGAATTGATTGCCGGGAAATATACAGCCGGTGAGCT
TGAGTCGGGTAATCTTGAATTCGACTTCCAGGACGGGGTCATCTCCATGGGAGAATTCAGCCCTGTAATCCCTGATGGAT
TCAAGAGCGAAATGAACCAGCATATCAAAGCATATGTCGATACCGGGAAACTACCGAACGGAAAGGAGCCGCCACTATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.303

95.298

0.498

Multiple sequence alignment