Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GRB21_RS04460 Genome accession   NZ_CP047073
Coordinates   890934..892529 (-) Length   531 a.a.
NCBI ID   WP_005769277.1    Uniprot ID   Q889C6
Organism   Pseudomonas syringae pv. tomato strain delta X     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 885934..897529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRB21_RS04440 - 887303..888418 (-) 1116 WP_011103299.1 efflux RND transporter periplasmic adaptor subunit -
  GRB21_RS04445 - 888500..889117 (-) 618 WP_011103300.1 TetR/AcrR family transcriptional regulator -
  GRB21_RS04455 pilR 889591..890931 (-) 1341 WP_011103301.1 sigma-54-dependent transcriptional regulator Regulator
  GRB21_RS04460 pilS 890934..892529 (-) 1596 WP_005769277.1 sensor histidine kinase Regulator
  GRB21_RS04465 - 892519..892758 (-) 240 WP_057403016.1 PP0621 family protein -
  GRB21_RS04470 - 892892..893914 (-) 1023 WP_005769279.1 outer membrane protein assembly factor BamD -
  GRB21_RS04475 rluD 894064..895026 (+) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GRB21_RS04480 pgeF 895023..895751 (+) 729 WP_011103303.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58350.17 Da        Isoelectric Point: 6.8652

>NTDB_id=410152 GRB21_RS04460 WP_005769277.1 890934..892529(-) (pilS) [Pseudomonas syringae pv. tomato strain delta X]
MTAETPSLTSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
GLAMTDAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARLQVSEGLAEQRAADVDSLEELNALILQRMRTGIVVLDARRQVVLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLINPIMVPRSITTSSIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEDLSAPDRRLGQIIHDQSQRIDRVIENVLQLSRRREAQPELLDLKVWLENFVSDFRSSAAAD
QSIHVQISSGMLTTRMDAGQLTQIITNLVQNGLRYSRRNHPSAQVWLNLHHDRESDLPILEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYIPRPHDGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=410152 GRB21_RS04460 WP_005769277.1 890934..892529(-) (pilS) [Pseudomonas syringae pv. tomato strain delta X]
GTGACCGCTGAGACGCCTTCGCTTACCAGCCCGCAGGCGCAACGGATTCTGCGGCTGTATCACCTTTATCGACTGACCAT
TGGCGTCGTGCTGGTTCTGTTGATCTCCAGCAGCCTGGAAACCGAGTTGCTGCAACTGGCCAATCCGAATCTGTTCCGTT
CGGGCTGCTGGCTGTACCTGGTGTTCAACATTCTGGTGGTGGTGCTGCTGGAGCGCCCCAGCCGCCAGGCGCAGCTGTTT
GGCTTGGCGATGACCGACGCAATCATGCTTTCCGGGCTGTTTTATGCGGCCGGCGGGCCGTCGAGCGGCATCGGCAACCT
GTTGATCGCATCCGTGGCGATCAGCAACGTGCTGCTGCGAGGCCGCATCGGCCTGTTGATCGCTGCTGTTTCTGCCATTG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCTTCGGTGTCCAACGACTACGTGCAGGCCGGTTCTCTGGGT
GCGCTGTGCTTCGCCGCCGCGCTGTTGGTGCAGGCACTGACTGCGCGCCTGCAAGTCAGCGAGGGGCTGGCCGAGCAACG
GGCAGCGGATGTCGACAGCCTTGAAGAGCTCAATGCGCTGATCCTGCAGCGCATGCGCACAGGCATTGTGGTACTGGATG
CGCGCCGCCAGGTGGTGCTGGCCAATCAGGGGGCCTTGACCCTGCTCGGCCATGAACGATTGGTCGGTCAGGTCATCGAC
GCTTACTCGCCGCAGTTGGTCGAGCGCCTGCGCCAGTGGCTGATCAACCCGATCATGGTGCCGCGCAGCATCACCACCTC
ATCTATCGGGCCTGTGCTGCAACCCAGCTTTGCCGCGCTCAATCGGGGCGACCAGCGTCAAACGCTGATCTTCCTTGAAG
ATCTGTCGCAGATTGCCCATCAGGCGCAGCAGCTCAAGCTTGCTGCGCTGGGCCGCCTGACCGCAGGCATCGCCCACGAA
ATACGCAACCCGTTGGGTGCGGTCAGCCATGCTGCGCAGTTACTCAACGAGTCGGAAGACCTCAGCGCGCCGGATCGCCG
TCTGGGGCAGATCATTCATGATCAGTCGCAGCGCATTGATCGGGTGATTGAAAACGTCCTGCAATTGTCTCGCCGACGCG
AAGCACAACCCGAACTGCTCGACCTGAAAGTCTGGCTGGAAAATTTTGTCAGCGACTTTCGTAGCTCGGCCGCTGCGGAT
CAGTCGATTCATGTGCAAATAAGCTCAGGCATGCTGACCACTCGCATGGACGCCGGGCAACTGACCCAGATCATCACCAA
CCTGGTGCAGAACGGCCTACGCTACAGCCGCCGCAATCACCCGTCGGCGCAGGTCTGGCTGAACCTGCACCATGACCGGG
AAAGCGATTTACCCATCCTGGAAGTGCTGGACGACGGGCCGGGTGTCAGCGAACAACACCTGAGCAAGATTTTCGAACCG
TTTTTCACCACGGAAAGCAAAGGCACCGGCCTGGGTCTATACCTTTCCCGTGAATTGTGCGAAAGCAATCAGGCGCATCT
GGAATATATCCCCCGACCACACGACGGTGGCAGCTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-524)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q889C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.842

100

0.62

Multiple sequence alignment