Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GQX72_RS09095 Genome accession   NZ_CP047059
Coordinates   1993008..1994375 (-) Length   455 a.a.
NCBI ID   WP_142609139.1    Uniprot ID   -
Organism   Vibrio cholerae isolate CTMA_1441     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1988008..1999375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQX72_RS09060 (GQX72_09060) moaE 1988731..1989183 (-) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -
  GQX72_RS09065 (GQX72_09065) moaD 1989185..1989430 (-) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  GQX72_RS09070 (GQX72_09070) moaC 1989427..1989906 (-) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  GQX72_RS09075 (GQX72_09075) moaB 1989917..1990429 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  GQX72_RS09080 (GQX72_09080) moaA 1990489..1991478 (-) 990 WP_000068572.1 GTP 3',8-cyclase MoaA -
  GQX72_RS09085 (GQX72_09085) - 1991784..1992674 (+) 891 WP_000061070.1 YvcK family protein -
  GQX72_RS09090 (GQX72_09090) luxU 1992663..1993004 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  GQX72_RS09095 (GQX72_09095) luxO 1993008..1994375 (-) 1368 WP_142609139.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GQX72_RS09100 (GQX72_09100) uvrB 1994806..1996836 (-) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  GQX72_RS09110 (GQX72_09110) rsxA 1997718..1998299 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  GQX72_RS09115 (GQX72_09115) rsxB 1998299..1998886 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50853.15 Da        Isoelectric Point: 5.5755

>NTDB_id=410123 GQX72_RS09095 WP_142609139.1 1993008..1994375(-) (luxO) [Vibrio cholerae isolate CTMA_1441]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTLNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=410123 GQX72_RS09095 WP_142609139.1 1993008..1994375(-) (luxO) [Vibrio cholerae isolate CTMA_1441]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
ATTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(2-108)

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.053

99.341

0.378

Multiple sequence alignment