Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   H1I71_RS17650 Genome accession   NZ_CP059353
Coordinates   3642169..3642804 (+) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain 2016LNAB1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3637169..3647804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1I71_RS17630 (H1I71_17520) - 3637247..3638062 (+) 816 WP_000011159.1 DsbC family protein -
  H1I71_RS17635 (H1I71_17525) - 3638307..3639608 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  H1I71_RS17640 (H1I71_17530) thrC 3639664..3640803 (+) 1140 WP_000063593.1 threonine synthase -
  H1I71_RS17645 (H1I71_17535) pbpG 3640910..3641956 (-) 1047 WP_003384760.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  H1I71_RS17650 (H1I71_17540) letA 3642169..3642804 (+) 636 WP_000633799.1 response regulator Regulator
  H1I71_RS17655 (H1I71_17545) pilS 3642815..3644383 (+) 1569 WP_001160333.1 PAS domain-containing sensor histidine kinase Regulator
  H1I71_RS17660 (H1I71_17550) - 3644408..3645829 (+) 1422 WP_000840549.1 sigma-54 dependent transcriptional regulator -
  H1I71_RS17665 (H1I71_17555) - 3645833..3647017 (-) 1185 WP_000942504.1 S41 family peptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=409989 H1I71_RS17650 WP_000633799.1 3642169..3642804(+) (letA) [Acinetobacter baumannii strain 2016LNAB1]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=409989 H1I71_RS17650 WP_000633799.1 3642169..3642804(+) (letA) [Acinetobacter baumannii strain 2016LNAB1]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCAGGCATCGGTGGTGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTCGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCGTTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGCGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAACCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55
  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55