Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HYDSHO_RS06850 Genome accession   NC_015587
Coordinates   1274916..1275974 (-) Length   352 a.a.
NCBI ID   WP_015419933.1    Uniprot ID   M1REV2
Organism   Hydrogenobaculum sp. SHO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1269916..1280974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYDSHO_RS06825 (HydSHO_1347) - 1270863..1271492 (-) 630 WP_015419929.1 HAD-IA family hydrolase -
  HYDSHO_RS06830 (HydSHO_1348) - 1271492..1271920 (-) 429 WP_012514409.1 RsmD family RNA methyltransferase -
  HYDSHO_RS06835 (HydSHO_1349) - 1271983..1272576 (+) 594 WP_015419930.1 D-sedoheptulose 7-phosphate isomerase -
  HYDSHO_RS06840 (HydSHO_1350) - 1272554..1273783 (+) 1230 WP_015419931.1 ComEC/Rec2 family competence protein -
  HYDSHO_RS06845 (HydSHO_1351) - 1273778..1274911 (-) 1134 WP_015419932.1 aspartate aminotransferase family protein -
  HYDSHO_RS06850 (HydSHO_1352) recA 1274916..1275974 (-) 1059 WP_015419933.1 recombinase RecA Machinery gene
  HYDSHO_RS06855 (HydSHO_1353) gatC 1275986..1276270 (-) 285 WP_015419934.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  HYDSHO_RS06860 (HydSHO_1354) - 1276278..1278560 (-) 2283 WP_015419935.1 plasma-membrane proton-efflux P-type ATPase -
  HYDSHO_RS08520 (HydSHO_1355) - 1278587..1278721 (-) 135 WP_015419936.1 hypothetical protein -
  HYDSHO_RS06865 (HydSHO_1356) - 1278781..1279458 (-) 678 WP_015419937.1 flagellar basal body L-ring protein FlgH -
  HYDSHO_RS06870 (HydSHO_1357) - 1279467..1280792 (-) 1326 WP_015419938.1 acetyl-CoA carboxylase biotin carboxylase subunit -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38533.18 Da        Isoelectric Point: 8.3252

>NTDB_id=40998 HYDSHO_RS06850 WP_015419933.1 1274916..1275974(-) (recA) [Hydrogenobaculum sp. SHO]
MDQEKKKALEATLTQVEKKYGKGAVMPMKAAYEKQTINVIPTGILSVDRATGVGGLPRGKIIEIFGPESAGKTTLALYAI
AEAQKQGGIALFIDAEHALDPKYAVKLGVNLDAMYISQPDYGEQALEIADAFINSNTVDIIVVDSVAALVPKDELEGEMG
DAQVGKQARLMSQALRKLKGATNKSNTTLIFINQIREKIGQMYGNPETTPGGRALKFFADMRLEVRKTGDIKAGDNKIGY
SAKVRVVKNKLAPPFQEGEYEVYFGEGVCKICDLVNVAIEMGIIQKSGSWYSYQDTKIGQGKEQVKTFLTENKDIAKDIE
TKIRQAIYSSNNPPPSEENKKEQKAQTKKEEA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=40998 HYDSHO_RS06850 WP_015419933.1 1274916..1275974(-) (recA) [Hydrogenobaculum sp. SHO]
ATGGATCAAGAAAAGAAAAAAGCCTTAGAGGCGACTCTTACACAAGTAGAAAAGAAATACGGCAAAGGTGCCGTTATGCC
TATGAAGGCCGCCTACGAAAAACAAACCATAAACGTCATTCCTACAGGGATATTGTCTGTGGATAGAGCTACGGGAGTAG
GTGGCTTACCAAGGGGTAAGATTATAGAAATATTTGGACCAGAATCTGCAGGCAAAACCACATTAGCCCTTTATGCTATA
GCAGAAGCCCAAAAGCAAGGGGGTATAGCGCTTTTTATAGACGCAGAACACGCTTTGGACCCAAAGTACGCCGTAAAACT
TGGGGTAAATCTTGATGCTATGTATATATCCCAGCCAGATTATGGAGAGCAAGCCCTTGAGATAGCGGATGCTTTTATAA
ACTCAAACACAGTGGATATTATAGTAGTAGACTCGGTGGCTGCTTTGGTACCAAAAGATGAATTAGAAGGCGAAATGGGT
GATGCTCAAGTAGGTAAACAAGCAAGGCTTATGTCTCAGGCTTTAAGAAAACTAAAGGGAGCCACCAATAAATCCAATAC
AACCCTTATATTTATAAATCAAATAAGAGAAAAAATAGGTCAGATGTACGGAAACCCAGAAACCACACCGGGCGGAAGAG
CTTTGAAGTTTTTTGCAGATATGAGGCTTGAAGTAAGAAAAACTGGAGATATAAAAGCCGGAGATAACAAAATAGGCTAC
AGTGCGAAGGTAAGGGTAGTAAAAAACAAATTAGCACCACCTTTCCAAGAGGGCGAATACGAAGTTTACTTTGGCGAAGG
TGTATGTAAAATCTGTGATCTTGTAAACGTAGCAATAGAGATGGGTATAATTCAAAAAAGCGGTAGTTGGTACAGCTATC
AAGATACAAAGATAGGCCAAGGCAAAGAACAAGTTAAGACATTTTTAACTGAAAACAAAGATATAGCAAAAGACATAGAA
ACCAAAATAAGACAAGCCATATATAGCTCCAACAACCCACCACCATCAGAAGAAAACAAAAAAGAGCAAAAAGCCCAAAC
CAAAAAAGAAGAAGCGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M1REV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

58.055

93.466

0.543
  recA Streptococcus pneumoniae D39

53.541

100

0.537
  recA Streptococcus pneumoniae TIGR4

53.541

100

0.537
  recA Streptococcus pneumoniae R6

53.541

100

0.537
  recA Streptococcus pneumoniae Rx1

53.541

100

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

55.425

96.875

0.537
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.495

94.034

0.531
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.36

97.727

0.531
  recA Acinetobacter baylyi ADP1

54.07

97.727

0.528
  recA Streptococcus mitis NCTC 12261

53.448

98.864

0.528
  recA Streptococcus mitis SK321

53.161

98.864

0.526
  recA Ralstonia pseudosolanacearum GMI1000

56.575

92.898

0.526
  recA Streptococcus mutans UA159

56.923

92.33

0.526
  recA Acinetobacter baumannii D1279779

55.758

93.75

0.523
  recA Glaesserella parasuis strain SC1401

55.455

93.75

0.52
  recA Lactococcus lactis subsp. cremoris KW2

55.963

92.898

0.52
  recA Neisseria gonorrhoeae strain FA1090

56.481

92.045

0.52
  recA Neisseria gonorrhoeae MS11

56.481

92.045

0.52
  recA Pseudomonas stutzeri DSM 10701

56.481

92.045

0.52
  recA Neisseria gonorrhoeae MS11

56.481

92.045

0.52
  recA Streptococcus pyogenes NZ131

56

92.33

0.517
  recA Vibrio cholerae strain A1552

53.916

94.318

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.916

94.318

0.509
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.939

93.75

0.506
  recA Helicobacter pylori strain NCTC11637

52.059

96.591

0.503
  recA Helicobacter pylori 26695

52.059

96.591

0.503

Multiple sequence alignment