Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GQX63_RS04475 Genome accession   NZ_CP047021
Coordinates   942393..943379 (+) Length   328 a.a.
NCBI ID   WP_000959284.1    Uniprot ID   -
Organism   Staphylococcus aureus strain M2024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 937393..948379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQX63_RS04450 (GQX63_04460) opp4B 937604..938566 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  GQX63_RS04455 (GQX63_04465) opp4C 938580..939461 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  GQX63_RS04460 (GQX63_04470) trpS 939503..940492 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  GQX63_RS04465 (GQX63_04475) spxA 940787..941182 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  GQX63_RS04470 (GQX63_04480) mecA 941553..942272 (+) 720 WP_001217728.1 adaptor protein MecA -
  GQX63_RS04475 (GQX63_04485) coiA 942393..943379 (+) 987 WP_000959284.1 competence protein CoiA family protein Machinery gene
  GQX63_RS04480 (GQX63_04490) pepF 943427..945235 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  GQX63_RS04485 (GQX63_04495) yjbH 945696..946502 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  GQX63_RS04490 (GQX63_04500) - 946525..946890 (-) 366 WP_000214065.1 truncated hemoglobin YjbI -
  GQX63_RS04495 (GQX63_04505) - 946994..947587 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  GQX63_RS04500 (GQX63_04510) - 947773..948120 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38810.39 Da        Isoelectric Point: 9.5881

>NTDB_id=409886 GQX63_RS04475 WP_000959284.1 942393..943379(+) (coiA) [Staphylococcus aureus strain M2024]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=409886 GQX63_RS04475 WP_000959284.1 942393..943379(+) (coiA) [Staphylococcus aureus strain M2024]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTATTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982

Multiple sequence alignment