Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GNX18_RS12535 Genome accession   NZ_CP046948
Coordinates   3079664..3080059 (-) Length   131 a.a.
NCBI ID   WP_105102769.1    Uniprot ID   -
Organism   Microbulbifer sp. SH-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3074664..3085059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX18_RS12520 (GNX18_12505) - 3076093..3078252 (-) 2160 WP_138235210.1 methyl-accepting chemotaxis protein -
  GNX18_RS12525 (GNX18_12510) - 3078509..3079051 (-) 543 WP_138235211.1 chemotaxis protein CheW -
  GNX18_RS12530 (GNX18_12515) pilH 3079070..3079432 (-) 363 WP_138235212.1 twitching motility response regulator PilH -
  GNX18_RS12535 (GNX18_12520) pilG 3079664..3080059 (-) 396 WP_105102769.1 twitching motility response regulator PilG Regulator
  GNX18_RS12540 (GNX18_12525) gshB 3080459..3081415 (+) 957 WP_138235213.1 glutathione synthase -
  GNX18_RS12545 (GNX18_12530) - 3081492..3082421 (+) 930 WP_166218520.1 energy transducer TonB -
  GNX18_RS12550 (GNX18_12535) - 3082482..3083075 (+) 594 WP_138235215.1 YqgE/AlgH family protein -
  GNX18_RS12555 (GNX18_12540) ruvX 3083130..3083558 (+) 429 WP_138235216.1 Holliday junction resolvase RuvX -
  GNX18_RS12560 (GNX18_12545) hemC 3083616..3084557 (+) 942 WP_166218522.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14360.60 Da        Isoelectric Point: 7.2147

>NTDB_id=409605 GNX18_RS12535 WP_105102769.1 3079664..3080059(-) (pilG) [Microbulbifer sp. SH-1]
MELNWESLTVMVIDDSKTIRRTAETLLQKAGCTVVTATDGFDALAKIADSRPDIIFVDIMMPRLDGYQTCALIKNNSEFR
STPVIMLSSKDGLFDKAKGRVVGCDQYLTKPFSKSELLGAISAHAKPHHAA

Nucleotide


Download         Length: 396 bp        

>NTDB_id=409605 GNX18_RS12535 WP_105102769.1 3079664..3080059(-) (pilG) [Microbulbifer sp. SH-1]
ATGGAGCTCAACTGGGAAAGTCTCACCGTGATGGTGATCGACGACAGTAAAACCATTCGTCGCACCGCGGAGACGCTGCT
GCAGAAAGCGGGCTGTACGGTGGTTACCGCCACTGACGGCTTCGACGCCCTGGCAAAGATCGCGGATTCGCGTCCGGACA
TCATTTTTGTAGATATCATGATGCCGCGACTCGACGGCTATCAGACCTGTGCGCTGATCAAGAACAACAGCGAATTCCGC
AGCACGCCTGTCATTATGCTGTCGAGCAAGGATGGCCTTTTCGACAAAGCCAAGGGACGCGTGGTGGGCTGTGATCAGTA
CCTCACCAAGCCGTTCAGCAAGAGTGAGCTGCTGGGCGCGATTTCTGCACACGCCAAACCGCACCACGCTGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75

94.656

0.71
  vicR Streptococcus mutans UA159

41.88

89.313

0.374

Multiple sequence alignment