Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   GPZ88_RS09625 Genome accession   NZ_CP046919
Coordinates   1901729..1903837 (+) Length   702 a.a.
NCBI ID   WP_166044279.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G2     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1896729..1908837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS09615 (GPZ88_09590) rplL 1900224..1900592 (-) 369 WP_009854351.1 50S ribosomal protein L7/L12 -
  GPZ88_RS09620 (GPZ88_09595) rplJ 1900661..1901164 (-) 504 WP_039696786.1 50S ribosomal protein L10 -
  GPZ88_RS09625 (GPZ88_09600) clpC 1901729..1903837 (+) 2109 WP_166044279.1 AAA family ATPase Regulator
  GPZ88_RS09630 (GPZ88_09605) - 1904041..1904709 (+) 669 WP_074561098.1 YoaK family protein -
  GPZ88_RS09635 (GPZ88_09610) mmuM 1904742..1905686 (-) 945 WP_166044281.1 homocysteine S-methyltransferase -
  GPZ88_RS09640 (GPZ88_09615) - 1905697..1907073 (-) 1377 WP_166044283.1 amino acid permease -
  GPZ88_RS09645 (GPZ88_09620) yihA 1907210..1907803 (-) 594 WP_074560304.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 77287.17 Da        Isoelectric Point: 4.7283

>NTDB_id=409456 GPZ88_RS09625 WP_166044279.1 1901729..1903837(+) (clpC) [Streptococcus ruminicola strain CNU_G2]
MANNQFYGRDPFGNMDDIFNQLMGNMGGYNSENKRYLINGREVTPEEFAQYRQTGKLPGNADYQEGAPTSAPKEDGILAK
LGTNLTERARSNELDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDIS
GLEAGTQYRGAFEENIQNMIKEVKDAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDSFNILMGIRDLYEKHHNVILPDNVLKAAVDFSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPVTDVKSLEKEIAEQKEKQEAAAAKEDYEAALNAKVRIEELQKQIDNHTEDKKVTATVNDVAESVERLTGVPVSNM
GASDIERLKELASRLKGKVIGQDEAVDAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIR
LDMSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEALTGQEDKDMKIMDRIAPYFRPEFLNRFNGIIEFSHLTKDDLNEIVDLMLAEVSKTIAKKGIDLV
VSDEAKQHLIEEGYDEAMGVRPLRRVIEQEIRDKITDFYLDHTDVKHLKADMVDGELVISEK

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=409456 GPZ88_RS09625 WP_166044279.1 1901729..1903837(+) (clpC) [Streptococcus ruminicola strain CNU_G2]
ATGGCAAACAATCAATTTTACGGAAGAGATCCTTTTGGAAATATGGATGATATCTTCAACCAATTAATGGGAAACATGGG
AGGATACAATTCAGAAAATAAACGTTACCTAATCAATGGTCGCGAAGTAACTCCTGAAGAATTTGCTCAATACCGTCAAA
CTGGTAAACTCCCAGGAAATGCTGATTATCAAGAAGGTGCTCCTACTTCTGCACCTAAAGAAGATGGTATCTTGGCTAAA
CTTGGAACAAACTTAACTGAACGTGCTCGTAGCAACGAACTCGATCCCGTTATCGGACGTAACAAGGAAATTCAAGAAAC
AGCTGAAATCTTGTCTCGTCGTACAAAGAACAACCCAGTTCTAGTCGGGGATGCTGGTGTTGGTAAAACAGCTGTCGTTG
AAGGATTAGCGCAAGCTATTGTTAACGGTGACGTGCCTGCTGCTATCAAGAACAAAGAAATCATCTCAATTGATATTTCA
GGCCTTGAAGCTGGTACACAATACCGTGGTGCTTTCGAAGAAAACATCCAAAACATGATTAAAGAAGTCAAAGACGCTGG
TAATATCATCCTCTTCTTTGATGAAATTCATCAAATTCTTGGAGCTGGTTCAACTGGTGGTGACTCTGGTTCTAAAGGTC
TAGCAGATATTCTTAAACCTGCTCTCTCTCGTGGTGAATTGACTGTTATTGGTGCTACTACTCAAGACGAATACCGCAAT
ACCATTTTGAAAAATGCTGCGCTCGCTCGTCGTTTCAACGAAGTTAAAGTTAACGCTCCTTCTGCTCAAGACAGCTTTAA
CATCTTGATGGGTATTCGTGATTTGTACGAAAAACACCACAATGTTATCCTTCCAGATAACGTTTTGAAAGCTGCCGTTG
ACTTTTCAATCCAATACATTCCACAACGTAGTTTACCAGATAAAGCAATTGACTTAATCGATATGACTGCTGCTCACCTA
GCTGCACAACATCCTGTAACTGATGTTAAATCTTTGGAAAAAGAAATTGCAGAACAAAAAGAAAAACAAGAAGCCGCTGC
CGCTAAAGAGGATTACGAAGCAGCTCTTAACGCCAAAGTGCGTATCGAAGAATTGCAAAAACAAATCGATAATCACACTG
AAGACAAGAAAGTTACTGCTACCGTTAATGACGTTGCTGAGTCCGTTGAACGTCTAACTGGTGTGCCTGTTTCAAACATG
GGCGCAAGCGACATCGAACGTTTGAAAGAATTGGCTAGTCGTTTGAAAGGTAAAGTCATTGGTCAAGACGAAGCTGTAGA
TGCTGTTGCTCGTGCTATTCGCCGTAACCGTGCTGGTTTTGATGAAGGAAACCGACCAATTGGTAGCTTCCTCTTCGTAG
GTCCTACTGGTGTTGGTAAGACAGAACTTGCTAAACAATTGGCTCTTGATATGTTTGGTTCAAAAGATGCAATCATCCGT
CTAGACATGTCTGAGTACTCTGACCGCACAGCCGTTTCTAAGTTGATTGGTACAACTGCTGGTTATGTTGGTTACGATGA
CAACAATAACACACTTACTGAACGTGTTCGTCGTAATCCTTACTCAATCGTTCTTCTTGATGAAATTGAAAAAGCCGACC
CACAAGTTATTACACTTCTTCTTCAAGTTTTGGACGATGGTCGTTTGACTGATGGTCAAGGTAATACAATTAACTTCAAG
AACACTGTTATCATTGCTACATCTAACGCTGGCTTTGGTAATGAAGCTTTGACAGGTCAAGAAGACAAAGACATGAAGAT
TATGGATCGTATCGCTCCATACTTCCGTCCGGAATTCCTTAACCGTTTCAACGGTATCATCGAATTCTCTCACTTGACTA
AGGATGACTTGAACGAAATCGTTGACTTGATGCTAGCTGAAGTTAGCAAGACTATCGCTAAGAAAGGTATTGATTTGGTT
GTCAGCGATGAAGCTAAACAACACCTTATCGAAGAAGGCTACGATGAAGCTATGGGTGTTCGACCACTCCGCCGTGTTAT
CGAACAAGAAATTCGCGATAAAATCACTGATTTCTACCTTGATCACACAGATGTTAAACACCTTAAAGCTGATATGGTTG
ACGGAGAACTTGTTATCAGCGAAAAATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(445-604)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(612-683)

AAA lid domain (AAA_lid_9)

(262-355)

ATPase family associated with various cellular activities (AAA) (AAA)

(120-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

48.212

99.573

0.48
  clpE Streptococcus mutans UA159

50.313

90.883

0.457
  clpE Streptococcus pneumoniae TIGR4

49.449

90.456

0.447
  clpE Streptococcus pneumoniae Rx1

49.449

90.456

0.447
  clpE Streptococcus pneumoniae D39

49.449

90.456

0.447
  clpE Streptococcus pneumoniae R6

49.449

90.456

0.447
  clpC Bacillus subtilis subsp. subtilis str. 168

45.345

94.872

0.43
  clpC Streptococcus pneumoniae Rx1

43.513

90.028

0.392
  clpC Streptococcus pneumoniae D39

43.513

90.028

0.392
  clpC Streptococcus pneumoniae TIGR4

43.561

89.601

0.39
  clpC Streptococcus thermophilus LMG 18311

43.387

88.319

0.383
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

43.296

88.177

0.382
  clpC Streptococcus thermophilus LMD-9

43.274

87.892

0.38
  clpC Streptococcus mutans UA159

42.926

88.604

0.38

Multiple sequence alignment