Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GPZ88_RS07410 Genome accession   NZ_CP046919
Coordinates   1433228..1435030 (+) Length   600 a.a.
NCBI ID   WP_166043878.1    Uniprot ID   A0A6G8I1D9
Organism   Streptococcus ruminicola strain CNU_G2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1428228..1440030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS07385 (GPZ88_07365) queA 1428934..1429962 (-) 1029 WP_166043870.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  GPZ88_RS07390 (GPZ88_07370) - 1430122..1430628 (+) 507 WP_033152227.1 VIT1/CCC1 transporter family protein -
  GPZ88_RS07395 (GPZ88_07375) nagB 1430763..1431467 (+) 705 WP_166043872.1 glucosamine-6-phosphate deaminase -
  GPZ88_RS07400 (GPZ88_07380) - 1431500..1432216 (+) 717 WP_166043874.1 pseudouridine synthase -
  GPZ88_RS07405 (GPZ88_07385) coiA 1432266..1433228 (+) 963 WP_166043876.1 competence protein CoiA Machinery gene
  GPZ88_RS07410 (GPZ88_07390) pepF 1433228..1435030 (+) 1803 WP_166043878.1 oligoendopeptidase F Regulator
  GPZ88_RS07415 (GPZ88_07395) - 1435102..1435620 (+) 519 WP_166043880.1 GNAT family N-acetyltransferase -
  GPZ88_RS07420 (GPZ88_07400) - 1435642..1436253 (+) 612 WP_157628832.1 HAD-IA family hydrolase -
  GPZ88_RS07425 (GPZ88_07405) - 1436301..1437002 (+) 702 WP_074601492.1 O-methyltransferase -
  GPZ88_RS07430 (GPZ88_07410) - 1437072..1438142 (+) 1071 WP_158913366.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69341.35 Da        Isoelectric Point: 4.5911

>NTDB_id=409450 GPZ88_RS07410 WP_166043878.1 1433228..1435030(+) (pepF) [Streptococcus ruminicola strain CNU_G2]
MSDNRSHIDEKYKWDLSTVFATDDAWEEALAELDSDLEDAKKFKGHLIESSKTLLDITESYLELSRRLEKVYVYASMKND
QDTTVAKYQEFEAKATTLYAKYSEVFAFYEPELMQLSQDDFAKFVAETPALSDYAHFFEKLFKRQAHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPVVLDEEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQYQHTYAKTLQTNVKVH
NFDARVHHFKSAREAALSANFIPESVYDTLIERVNAHLPLLHRYVELRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLSVFGKDYSERVHRAFTERWIDVNVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHFLDGFKGTIFRQAQFAEFEDMIHKADQAGEVLTSEY
LNNLYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASYLADKVVHGTQVDIDRYLDYLKAGNSDYPL
NVIEKAGVDMTSSDYLDAAFKIFEERLNELETLVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=409450 GPZ88_RS07410 WP_166043878.1 1433228..1435030(+) (pepF) [Streptococcus ruminicola strain CNU_G2]
ATGTCAGATAATCGTAGTCATATTGATGAAAAGTATAAATGGGATTTGAGTACTGTCTTTGCAACAGATGATGCTTGGGA
AGAAGCACTAGCTGAGCTTGATTCAGATTTAGAAGATGCTAAAAAATTTAAAGGGCACTTGATTGAATCAAGTAAGACTT
TGCTCGATATCACTGAAAGTTATCTTGAATTGTCACGCCGCTTGGAAAAAGTTTATGTCTATGCGTCAATGAAAAATGAC
CAAGATACAACAGTTGCTAAATACCAAGAATTTGAAGCAAAAGCAACAACACTTTACGCCAAATACAGCGAAGTTTTTGC
ATTTTATGAACCAGAATTGATGCAATTATCTCAAGATGATTTCGCTAAATTTGTGGCTGAAACACCAGCACTTTCAGATT
ATGCTCATTTCTTTGAAAAACTTTTCAAACGTCAAGCACACGTCTTGTCACAAAAAGAAGAAGAGTTGCTAGCAGGTGCT
CACGAAATCTTTGGTGCAGCTGGAGAGACTTTTGAAATTCTAGATAATGCTGACATTGTCTTTCCTGTTGTTTTGGATGA
AGAGGGCAATGAAGTTCAACTAACACATGGTAACTTCATCAGTCTTTTGGAATCAAAAAATCGCGATGTTCGAAAAGCGG
CTTACGAAGCTATGTATGCTACGTATGAACAATATCAACATACTTATGCCAAAACACTTCAAACAAATGTAAAAGTTCAT
AACTTTGATGCTCGTGTTCACCATTTCAAATCAGCGCGTGAAGCAGCACTTTCAGCAAACTTCATTCCTGAATCTGTCTA
CGATACTTTGATTGAACGCGTGAATGCACACTTGCCATTGCTTCATCGCTATGTGGAACTTCGTAAGAAAGTTCTTAAAC
TTGATGATTTGAAAATGTATGATATTCATACACCTTTGTCTGAAATGGATATGAGTTTCACTTACGAGGAAGCTTTGAAA
AAAGCAGAAGAGGTTTTGTCTGTCTTTGGTAAAGATTATTCAGAACGTGTTCATCGAGCTTTCACAGAACGCTGGATTGA
CGTTAATGTCAACAAAGGAAAACGTTCAGGAGCTTATTCTGGTGGGGCTTATGATACAAATGCCTTTATGCTTTTGAACT
GGCAAGATACACTTGATAATCTTTTCACTTTGGTACACGAAACAGGGCACAGCCTTCATTCTACTTTTACGCGTGAAACT
CAACCATACGTTTACGGTGATTACAGTATTTTCTTGGCTGAAATTGCTTCAACGACGAATGAAAATATCTTAACAGAAAC
ACTTTTGAAAGAAGTTGACGATGATAAAGCTCGCTTTGCGATTTTGAATCATTTCTTGGATGGTTTCAAAGGAACAATCT
TCCGTCAAGCACAGTTTGCAGAGTTTGAAGATATGATTCATAAAGCAGATCAAGCTGGTGAAGTATTGACAAGTGAATAC
CTTAACAATCTTTATGCAGACCTAAATGAAAAATATTACGGACTCAGTAAAGAAGATAATCCAGAAATTCAATACGAATG
GGCACGCATTCCGCATTTCTACTATAATTACTATGTCTATCAATACTCTACAGGATTTGCAGCAGCAAGTTATCTAGCTG
ATAAAGTGGTTCACGGTACACAAGTTGATATCGACCGTTACCTTGATTACCTCAAGGCTGGTAATTCTGATTACCCACTT
AATGTGATTGAAAAAGCTGGAGTTGATATGACAAGCAGTGATTATTTGGATGCTGCATTCAAGATTTTTGAAGAGCGTCT
AAATGAATTAGAAACTTTGGTCGAAAAAGGAGCACACCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8I1D9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.667

100

0.707

Multiple sequence alignment