Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   GPZ88_RS06165 Genome accession   NZ_CP046919
Coordinates   1193079..1194125 (+) Length   348 a.a.
NCBI ID   WP_074565181.1    Uniprot ID   A0AAE8HMA8
Organism   Streptococcus ruminicola strain CNU_G2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1188079..1199125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS06150 (GPZ88_06130) - 1189343..1190998 (+) 1656 WP_158913176.1 peptide ABC transporter substrate-binding protein -
  GPZ88_RS06155 (GPZ88_06135) - 1191110..1192024 (+) 915 WP_006530948.1 ABC transporter permease -
  GPZ88_RS06160 (GPZ88_06140) - 1192036..1193067 (+) 1032 WP_074565183.1 ABC transporter permease -
  GPZ88_RS06165 (GPZ88_06145) oppD 1193079..1194125 (+) 1047 WP_074565181.1 ABC transporter ATP-binding protein Regulator
  GPZ88_RS06170 (GPZ88_06150) amiF 1194125..1195057 (+) 933 WP_074565179.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38638.23 Da        Isoelectric Point: 4.9453

>NTDB_id=409438 GPZ88_RS06165 WP_074565181.1 1193079..1194125(+) (oppD) [Streptococcus ruminicola strain CNU_G2]
MSEETILQVKNLHVDFQTYAGEIKAIRDVNFDLKKGETLAIVGESGSGKSVTTKTLMGLSASNATITGDIDFKGKKLTEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEAWNRALDLMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDVLIADEPTTALDVTIQAQILNLMKKIQKERGSSIIFITHDLGVVAGMADRVAVMYAGKVIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHFAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=409438 GPZ88_RS06165 WP_074565181.1 1193079..1194125(+) (oppD) [Streptococcus ruminicola strain CNU_G2]
ATGAGTGAAGAAACAATTTTACAAGTTAAAAACCTCCATGTAGATTTCCAAACCTACGCTGGAGAAATTAAAGCCATTCG
CGACGTCAACTTTGACTTGAAGAAAGGCGAAACACTTGCTATCGTAGGTGAATCTGGATCAGGTAAATCTGTAACAACTA
AAACATTAATGGGGTTATCTGCCTCAAATGCTACTATTACAGGTGATATCGATTTTAAAGGTAAAAAACTTACTGAATTA
AAAGAAGACGAATGGATCAAAGTTCGTGGAAATGAAATCGCAATGATCTTCCAAGATCCAATGACAAGTCTAGACCCAAC
AATGAAAATTGGTCAACAAATTGCTGAACCAATCATGATCCACGAAAAAGTTTCAAAACAAGAAGCTTGGAATCGTGCGC
TAGATTTAATGAAAAATGTTGGTATTCCAAATGCGGAAGAACATATCAACGATTACCCACACCAATGGTCTGGTGGTATG
CGTCAACGTGCTGTTATTGCAATCGCACTTGCTGCTAACCCAGATGTCTTAATTGCTGACGAACCAACAACTGCCTTGGA
TGTTACTATTCAAGCTCAAATTCTTAACTTGATGAAAAAAATTCAAAAAGAACGTGGTTCATCAATCATCTTTATCACCC
ACGACCTTGGTGTCGTTGCTGGTATGGCTGACCGTGTTGCAGTTATGTATGCTGGTAAAGTTATTGAATATGGAACAGTT
GACGAAGTCTTCTACAATCCGCAACACCCATATACTTGGGGCTTGTTGAACTCAATGCCAACAACTGACACAGAAGCTGG
TAGCTTACAATCAATCCCAGGTACACCACCAGATCTTCTTAACCCACCAAAAGGTGATGCTTTTGCACCACGTAACGAAT
TCGCTTTGGATATCGATTACGAAGAAGAACCACCAATGTTTAAAGTTAGTGATACTCACTTTGCTGCAACTTGGTTGCTG
GATGAGCGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.115

99.713

0.799
  amiE Streptococcus salivarius strain HSISS4

57.31

98.276

0.563
  amiE Streptococcus thermophilus LMG 18311

57.91

96.264

0.557
  amiE Streptococcus thermophilus LMD-9

57.91

96.264

0.557

Multiple sequence alignment