Detailed information NTG0409439

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: GPZ88_RS06170
• Genome accession: NZ_CP046919
• Coordinates: 1194125..1195057 (+)
• Length: 310 a.a.
• NCBI ID: WP_074565179.1
• Uniprot ID: A0AAE8HM92
• Organism: Streptococcus ruminicola strain CNU_G2
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1189125..1200057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPZ88_RS06150 (GPZ88_06130)	-	1189343..1190998 (+)	1656	WP_158913176.1	peptide ABC transporter substrate-binding protein	-
GPZ88_RS06155 (GPZ88_06135)	-	1191110..1192024 (+)	915	WP_006530948.1	ABC transporter permease	-
GPZ88_RS06160 (GPZ88_06140)	-	1192036..1193067 (+)	1032	WP_074565183.1	ABC transporter permease	-
GPZ88_RS06165 (GPZ88_06145)	oppD	1193079..1194125 (+)	1047	WP_074565181.1	ABC transporter ATP-binding protein	Regulator
GPZ88_RS06170 (GPZ88_06150)	amiF	1194125..1195057 (+)	933	WP_074565179.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35068.84 Da
• Isoelectric Point: 5.4755

>NTDB_id=409439 GPZ88_RS06170 WP_074565179.1 1194125..1195057(+) (amiF) [Streptococcus ruminicola strain CNU_G2]
MTENRKKLVELKNVSLTFNEGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIDFNGETVSNL
KGKELHEFRKNVQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVNSKEERDEKVQELLSLVGLNKDHMTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQREKGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTKSLLSAIPEPDPESERERVHQVYDPSAELDGQEREMREITPGHFVLSTEAEAEEYKKALS

Nucleotide

• Length: 933 bp

>NTDB_id=409439 GPZ88_RS06170 WP_074565179.1 1194125..1195057(+) (amiF) [Streptococcus ruminicola strain CNU_G2]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTCTCTTTGACTTTCAACGAAGGCAAAAAGAATGAAGTAAA
AGCCATCAACAACGTCAGCTTCGATATCTATGAAGGTGAAGTCTTTGGTTTAGTTGGTGAATCAGGTTCTGGTAAAACAA
CTGTTGGACGTGCTATCTTAAAACTTTACGATATTAGTGATGGTGAAATCGACTTTAATGGAGAAACAGTTTCTAACCTT
AAAGGTAAAGAATTGCATGAATTCCGTAAAAATGTGCAAATGATTTTCCAAGACCCACAAGCAAGTCTTAATGGACGTAT
GAAAATCCGTGACATCGTTGCCGAAGGTCTTGATATTCACAAACTTGTTAATAGTAAAGAAGAGCGTGATGAAAAAGTTC
AAGAATTACTTTCTCTAGTAGGTTTGAACAAAGATCACATGACTCGTTACCCACACGAATTCTCTGGTGGTCAACGTCAA
CGTATTGGTATTGCACGTGCTCTTGCTGTACAACCAAAATTCATTATTGCTGATGAACCAATTTCTGCGCTTGACGTGTC
TATTCAAGCTCAAGTTGTTAACTTGATGCAAAAACTTCAACGCGAAAAAGGCTTGACTTATCTCTTCATCGCTCACGATT
TGTCAATGGTCAAATACATTTCAGATCGTATTGGTGTAATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGAAGAT
GTTTACAATAACCCAATTCACCCATACACTAAGAGTTTATTGTCTGCAATTCCAGAACCAGATCCAGAATCTGAACGTGA
ACGCGTGCATCAAGTTTATGATCCAAGTGCAGAACTTGATGGTCAAGAACGTGAAATGCGTGAAATTACACCAGGTCACT
TTGTACTTTCTACTGAAGCTGAAGCTGAAGAATATAAAAAAGCATTATCATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	56.536	98.71	0.558
amiF	Streptococcus thermophilus LMG 18311	56.209	98.71	0.555
amiF	Streptococcus salivarius strain HSISS4	55.7	99.032	0.552