Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GPZ88_RS01750 Genome accession   NZ_CP046919
Coordinates   329182..329991 (-) Length   269 a.a.
NCBI ID   WP_074602529.1    Uniprot ID   A0AAE8L3J1
Organism   Streptococcus ruminicola strain CNU_G2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 324182..334991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS01740 (GPZ88_01720) smc 324583..328122 (-) 3540 WP_166043167.1 chromosome segregation protein SMC -
  GPZ88_RS01745 (GPZ88_01725) rnc 328274..328960 (-) 687 WP_020917219.1 ribonuclease III -
  GPZ88_RS01750 (GPZ88_01730) vicX 329182..329991 (-) 810 WP_074602529.1 MBL fold metallo-hydrolase Regulator
  GPZ88_RS01755 (GPZ88_01735) vicK 329992..331344 (-) 1353 WP_166043168.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GPZ88_RS01760 (GPZ88_01740) vicR 331337..332047 (-) 711 WP_039696509.1 response regulator YycF Regulator
  GPZ88_RS01765 (GPZ88_01745) - 332359..333123 (+) 765 WP_166043170.1 amino acid ABC transporter ATP-binding protein -
  GPZ88_RS01770 (GPZ88_01750) - 333134..333946 (+) 813 WP_166043172.1 transporter substrate-binding domain-containing protein -
  GPZ88_RS01775 (GPZ88_01755) - 333962..334669 (+) 708 WP_039696506.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30096.95 Da        Isoelectric Point: 5.5642

>NTDB_id=409394 GPZ88_RS01750 WP_074602529.1 329182..329991(-) (vicX) [Streptococcus ruminicola strain CNU_G2]
MSENAFKYSVLASGSTGNSFYVETPQKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVLARRYNLD
VYANAKTWQMIDERNMIGKLDVGQKHVFERGKTLTFGDIDIESFGVSHDAVDPQFYRLMKDNKSFVVLTDTGYVSDRMAG
VIENADGYLIESNHDVEILRAGSYPWSLKQRILSDRGHLSNEDGADTMIRTIGNRTKRIYLGHLSKENNIKELAHMTMEN
NLMQADFAVGHDMTVFDTSPDEATPLAGL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=409394 GPZ88_RS01750 WP_074602529.1 329182..329991(-) (vicX) [Streptococcus ruminicola strain CNU_G2]
ATGTCTGAGAATGCTTTTAAATACAGTGTCTTAGCCTCCGGTTCAACTGGAAATTCATTTTATGTGGAAACGCCACAAAA
ACGTCTTTTGATAGATGCAGGTTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGAAAACCAGAAGATT
TGGATGCTATTTTGATTACGCACGAACACTCTGATCACATTAAAGGAGTAGGAGTGCTGGCTCGCAGATACAATCTTGAT
GTATATGCCAATGCCAAAACTTGGCAAATGATTGATGAGCGCAACATGATTGGAAAACTTGATGTTGGGCAAAAACATGT
CTTTGAACGTGGTAAAACATTGACTTTTGGTGATATTGATATTGAAAGTTTTGGAGTCAGTCACGATGCTGTCGATCCGC
AATTTTACCGTTTGATGAAAGATAATAAGTCATTTGTCGTTCTGACAGATACTGGTTATGTTAGTGACCGAATGGCGGGT
GTGATTGAAAATGCTGATGGTTATCTGATTGAGTCAAACCATGATGTTGAGATTTTGCGTGCGGGTTCTTATCCGTGGAG
CTTGAAACAACGTATTCTATCTGATCGTGGTCACTTGTCAAATGAAGATGGTGCTGATACCATGATTCGTACTATCGGCA
ATCGCACAAAAAGAATTTATCTTGGACACTTGAGTAAAGAAAATAATATCAAAGAATTGGCTCATATGACCATGGAAAAT
AACTTGATGCAAGCTGATTTTGCTGTTGGTCATGACATGACTGTTTTTGATACATCACCTGATGAAGCAACGCCTTTAGC
AGGTCTATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment