Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GPY14_RS10870 Genome accession   NZ_CP046918
Coordinates   2298609..2299994 (-) Length   461 a.a.
NCBI ID   WP_033575221.1    Uniprot ID   -
Organism   Bacillus velezensis strain BA-26     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2293609..2304994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY14_RS10835 (GPY14_10835) flgL 2293785..2294702 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  GPY14_RS10840 (GPY14_10840) flgK 2294714..2296230 (-) 1517 Protein_2170 flagellar hook-associated protein FlgK -
  GPY14_RS10845 (GPY14_10845) - 2296246..2296728 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GPY14_RS10850 (GPY14_10850) flgM 2296743..2297009 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  GPY14_RS10855 (GPY14_10855) - 2297079..2297498 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  GPY14_RS10860 (GPY14_10860) comFC 2297572..2298261 (-) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  GPY14_RS10865 (GPY14_10865) - 2298267..2298551 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  GPY14_RS10870 (GPY14_10870) comFA 2298609..2299994 (-) 1386 WP_033575221.1 DEAD/DEAH box helicase Machinery gene
  GPY14_RS10875 (GPY14_10875) - 2300102..2300950 (-) 849 WP_015418336.1 DegV family protein -
  GPY14_RS10880 (GPY14_10880) degU 2301048..2301737 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GPY14_RS10885 (GPY14_10885) degS 2301814..2302977 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GPY14_RS10890 (GPY14_10890) - 2303200..2303847 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52529.97 Da        Isoelectric Point: 10.0818

>NTDB_id=409355 GPY14_RS10870 WP_033575221.1 2298609..2299994(-) (comFA) [Bacillus velezensis strain BA-26]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKKAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVDVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTLPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=409355 GPY14_RS10870 WP_033575221.1 2298609..2299994(-) (comFA) [Bacillus velezensis strain BA-26]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGAAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTATGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTAGACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCTTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629

Multiple sequence alignment