Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   GPY14_RS10885 Genome accession   NZ_CP046918
Coordinates   2301814..2302977 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain BA-26     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2296814..2307977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY14_RS10855 (GPY14_10855) - 2297079..2297498 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  GPY14_RS10860 (GPY14_10860) comFC 2297572..2298261 (-) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  GPY14_RS10865 (GPY14_10865) - 2298267..2298551 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  GPY14_RS10870 (GPY14_10870) comFA 2298609..2299994 (-) 1386 WP_033575221.1 DEAD/DEAH box helicase Machinery gene
  GPY14_RS10875 (GPY14_10875) - 2300102..2300950 (-) 849 WP_015418336.1 DegV family protein -
  GPY14_RS10880 (GPY14_10880) degU 2301048..2301737 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GPY14_RS10885 (GPY14_10885) degS 2301814..2302977 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GPY14_RS10890 (GPY14_10890) - 2303200..2303847 (+) 648 WP_003151384.1 YigZ family protein -
  GPY14_RS10895 (GPY14_10895) - 2303852..2305066 (+) 1215 WP_033575220.1 LCP family protein -
  GPY14_RS10900 (GPY14_10900) - 2305156..2306232 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  GPY14_RS10905 (GPY14_10905) tuaH 2306365..2307561 (-) 1197 WP_015418338.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=409357 GPY14_RS10885 WP_007407484.1 2301814..2302977(-) (degS) [Bacillus velezensis strain BA-26]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=409357 GPY14_RS10885 WP_007407484.1 2301814..2302977(-) (degS) [Bacillus velezensis strain BA-26]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment