Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H0272_RS02010 Genome accession   NZ_CP059281
Coordinates   394628..395392 (+) Length   254 a.a.
NCBI ID   WP_001136234.1    Uniprot ID   -
Organism   Escherichia coli strain C9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 389628..400392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0272_RS01990 (H0272_01990) acpT 390582..391169 (+) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -
  H0272_RS01995 (H0272_01995) nikA 391280..392854 (+) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  H0272_RS02000 (H0272_02000) nikB 392854..393798 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  H0272_RS02005 (H0272_02005) nikC 393795..394628 (+) 834 WP_001008957.1 nickel ABC transporter permease subunit NikC -
  H0272_RS02010 (H0272_02010) amiE 394628..395392 (+) 765 WP_001136234.1 nickel import ATP-binding protein NikD Regulator
  H0272_RS02015 (H0272_02015) nikE 395389..396195 (+) 807 WP_000173682.1 nickel import ATP-binding protein NikE -
  H0272_RS02020 (H0272_02020) nikR 396201..396602 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  H0272_RS02025 (H0272_02025) - 396801..397547 (+) 747 WP_001296489.1 UTRA domain-containing protein -
  H0272_RS02030 (H0272_02030) - 397572..398045 (+) 474 WP_001161648.1 PTS sugar transporter subunit IIA -
  H0272_RS02035 (H0272_02035) - 398042..398323 (+) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  H0272_RS02040 (H0272_02040) - 398400..399758 (+) 1359 WP_001545659.1 PTS galactitol transporter subunit IIC -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26811.42 Da        Isoelectric Point: 6.9014

>NTDB_id=409357 H0272_RS02010 WP_001136234.1 394628..395392(+) (amiE) [Escherichia coli strain C9]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGNVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=409357 H0272_RS02010 WP_001136234.1 394628..395392(+) (amiE) [Escherichia coli strain C9]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGATCTCGACGTGGTAGCACAAGCACGCATCCTCGATCTACTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTAGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAAATTGTCGAACAGGGCAATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment