Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FAZ98_RS01470 Genome accession   NZ_CP046913
Coordinates   332692..334203 (-) Length   503 a.a.
NCBI ID   WP_158951823.1    Uniprot ID   -
Organism   Paraburkholderia acidisoli strain DHF22     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327692..339203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ98_RS01445 (FAZ98_01445) - 328411..329046 (-) 636 WP_158948087.1 LON peptidase substrate-binding domain-containing protein -
  FAZ98_RS01450 (FAZ98_01450) rapZ 329088..329981 (-) 894 WP_158948089.1 RNase adapter RapZ -
  FAZ98_RS01455 (FAZ98_01455) hprK 330103..331071 (-) 969 WP_028201859.1 HPr(Ser) kinase/phosphatase -
  FAZ98_RS01460 (FAZ98_01460) ptsN 331257..331793 (-) 537 WP_407672021.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FAZ98_RS01465 (FAZ98_01465) hpf 332156..332518 (-) 363 WP_158948091.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FAZ98_RS01470 (FAZ98_01470) rpoN/rpoN1 332692..334203 (-) 1512 WP_158951823.1 RNA polymerase factor sigma-54 Machinery gene
  FAZ98_RS01475 (FAZ98_01475) lptB 334719..335492 (-) 774 WP_407672069.1 LPS export ABC transporter ATP-binding protein -
  FAZ98_RS01480 (FAZ98_01480) lptA 335507..336217 (-) 711 WP_158948095.1 lipopolysaccharide transport periplasmic protein LptA -
  FAZ98_RS01485 (FAZ98_01485) lptC 336250..336849 (-) 600 WP_158948097.1 LPS export ABC transporter periplasmic protein LptC -
  FAZ98_RS01490 (FAZ98_01490) - 336846..337418 (-) 573 WP_158948099.1 HAD family hydrolase -
  FAZ98_RS01495 (FAZ98_01495) kdsD 337418..338404 (-) 987 WP_158948101.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55290.41 Da        Isoelectric Point: 5.0106

>NTDB_id=409305 FAZ98_RS01470 WP_158951823.1 332692..334203(-) (rpoN/rpoN1) [Paraburkholderia acidisoli strain DHF22]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVATAIAQNPLLENEDDWIASPLRVAADGSLIAQPPASSGAEPMQ
GASTSSASNGSDDSEREPRGVDEYDGMSGDTNGDSSQWNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLMAQLRETNA
SLRDRALITFLIESLDEDGYLSATCEEILADIPAELEVDGDELNAALALLHSFDPAGVGARSASECLKLQLLRMTSTATR
TLALEIVANHLELLAARDFTRLRKQLKTGDDELRDAHMLIRSLEPFPGAAYGKAEADYVVPDIMVKKTGQNWHAELNPEV
VPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFVHGEIAMRPLVLREIADT
LGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENPKSPLSDSRIAELLAEQGFVV
ARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=409305 FAZ98_RS01470 WP_158951823.1 332692..334203(-) (rpoN/rpoN1) [Paraburkholderia acidisoli strain DHF22]
ATGAAAGCCAGCCTCCAACTCCGCCTCTCGCAGCATCTTGCGCTGACTCCCCAACTGCAACAGTCCATCCGGCTGCTGCA
GTTGTCGACGCTCGAACTGCAACAGGAGGTCGCCACGGCGATCGCGCAGAATCCCTTGCTCGAGAACGAAGACGACTGGA
TCGCCAGCCCCCTGCGCGTGGCCGCCGACGGCTCGCTCATCGCCCAGCCGCCCGCGTCTTCGGGCGCGGAGCCCATGCAA
GGCGCGAGCACGTCGAGCGCCTCCAACGGCAGCGACGACAGCGAACGCGAGCCGCGCGGCGTCGACGAATACGACGGCAT
GTCGGGCGACACCAACGGCGATTCGAGCCAGTGGAACCTCGACGACTACGGCCGCTCCGGCAACGCCTCCGACGACGACG
ACCTGCCGCCGCTGCAGATCCACGAATCGACCACCACGCTGCGCGATCACCTGATGGCGCAGCTGCGCGAAACCAACGCG
AGCCTGCGCGATCGCGCGCTCATCACCTTCCTCATCGAGTCGCTCGACGAAGACGGTTACCTGAGCGCCACGTGCGAGGA
AATTCTTGCCGATATTCCCGCAGAGCTGGAAGTCGACGGCGACGAACTCAACGCGGCGCTCGCGCTGCTGCACAGCTTCG
ACCCGGCGGGCGTGGGCGCGCGCTCGGCGTCCGAATGCCTGAAGCTGCAATTGCTGCGCATGACGTCGACGGCTACGCGC
ACGCTCGCGCTGGAGATCGTCGCGAATCACCTCGAACTGCTGGCCGCGCGCGACTTCACGCGCCTGCGCAAGCAACTGAA
GACCGGCGACGACGAACTCCGCGACGCGCACATGCTGATCCGCTCGCTCGAGCCCTTCCCCGGCGCGGCATACGGCAAGG
CGGAAGCCGACTACGTGGTGCCCGACATCATGGTCAAAAAAACGGGGCAGAACTGGCACGCGGAGCTCAACCCCGAAGTG
GTACCGAAGCTGCGCATCAACCATCTGTACGCGAACATCCTGCGCAACAACCGCGGCGATCCGGGCAGCGGCTCGCTGCG
CCAGCAGTTGCAGGAAGCGCGCTGGCTGATCAAGAACATCCAGCAGCGCTTCGAGACGATCCTGCGGGTCGCGCAGGCTA
TCGTCGAGCGTCAGAAGAACTTTTTCGTGCACGGCGAAATCGCCATGCGCCCCTTGGTTTTGAGGGAGATTGCTGATACG
CTGGGCCTACACGAATCAACTGTCTCGCGTGTGACAACGGGCAAATATATGCTCACGCCATTCGGGACGCTTGAGTTCAA
ATACTTCTTCGGTTCGCATGTGTCGACCGATACGGGAGGCGCGGCATCGTCCACCGCGATACGTGCGCTCATCAAGCAAC
TGATAGGAGCCGAAAACCCCAAATCTCCTCTTTCGGACAGCCGCATTGCTGAATTGCTGGCAGAACAGGGCTTCGTCGTG
GCGCGACGTACCGTCGCCAAGTACCGTGAAGCGCTGAAGATTCCAGCCGTCAACTTGCGCAAGTCTCTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(346-501)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(140-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.799

100

0.668

Multiple sequence alignment