Detailed information NTG0409266

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: GO485_RS29925
• Genome accession: NZ_CP046904
• Coordinates: 6905817..6908249 (+)
• Length: 810 a.a.
• NCBI ID: WP_145879576.1
• Uniprot ID: A0A562PI05
• Organism: Pseudoduganella flava strain DSM 26639
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6900817..6913249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO485_RS29905 (GO485_29840)	-	6901741..6903021 (+)	1281	WP_145879584.1	lipoprotein-releasing ABC transporter permease subunit	-
GO485_RS29910 (GO485_29845)	-	6903014..6904273 (+)	1260	WP_145879582.1	lipoprotein-releasing ABC transporter permease subunit	-
GO485_RS29915 (GO485_29850)	lolD	6904266..6904958 (+)	693	WP_145879580.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
GO485_RS29920 (GO485_29855)	-	6904962..6905765 (+)	804	WP_145879578.1	TatD family hydrolase	-
GO485_RS29925 (GO485_29860)	comA	6905817..6908249 (+)	2433	WP_145879576.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
GO485_RS29930 (GO485_29865)	-	6908372..6909202 (+)	831	WP_145879574.1	alpha/beta fold hydrolase	-
GO485_RS29935 (GO485_29870)	dcd	6909297..6909863 (+)	567	WP_145879571.1	dCTP deaminase	-
GO485_RS29940 (GO485_29875)	-	6909993..6911513 (-)	1521	WP_145879568.1	ATP-binding protein	-
GO485_RS29945 (GO485_29880)	-	6911515..6912204 (-)	690	WP_145879566.1	response regulator transcription factor	-
GO485_RS29950 (GO485_29885)	-	6912377..6913000 (+)	624	WP_145879563.1	Spy/CpxP family protein refolding chaperone	-

Sequence

Protein

• Length: 810 a.a.
• Molecular weight: 87096.07 Da
• Isoelectric Point: 10.3225

>NTDB_id=409266 GO485_RS29925 WP_145879576.1 6905817..6908249(+) (comA) [Pseudoduganella flava strain DSM 26639]
MRSSILGFVAGAAFLQTRAALPAHPLAWLLVLLVLAALIGWRFDVRGRCAALFACGAGIGCMWAALVAADALSAGLAKAD
EGRDVVVVGTIADLPVANSQFTRFQLDVEQADGIVVPPRVALSWYGNLRGQEAPVPALRPGERWRLKVRLQRPHGNANPH
GFDYELWLLEQRIRATGYVRPDGPQQRLNTFVFTLPHAVERLRWLLRARIERALVGREYAGVIVALVVGDQRDIDQSDWQ
VFNRTGISHLVSISGLHITMIAGLAAWLMSALWRRSFFVRGVRLPLRLPAQKAAALAGMLAAFGYVLLAGFGVPAQRTLY
MLAVVALAVWTDRATSVSHVLALAAGIVVLLDPWAVMWPGFWLSFGAVGAILYASVGRTQIVKNPGNPDAADEDERRGKP
LTRRQRGMRALQAAVGTQYAVTLGLVPLTLLLFAQVSLVSPLANAIAIPVVSFVVTPLALAGGVLPDPFSSPLLVAAHET
MRALAVLLRWCSTAPLAVWQAPAPPWWLFAFALAGTAWLLAPRGWPVRWLGVFTWVPLLTAPADAPRPGTLRITALDVGQ
GMAVLVETAGHRLLYDTGPAYGPEADAGGRVIVPYLRARGIGRLDGLVVSHADADHAGGALTLLANTRVNWVLSSLGPGH
RIARAAASHAHCVAGQHWEWDGVRFEMLHPGAASYADAGLKTNARSCTLRIAAPGGTVLLPGDIEAAQEAELVARHGDGL
RADVLLAPHHGSGTSSTPAFLAAVRPRIAIFQVGYRNRYRHPKGEVYARYGSIGAQRLRTDGAGAVEVELGADITATAYR
TVHPRYWYDR

Nucleotide

• Length: 2433 bp

>NTDB_id=409266 GO485_RS29925 WP_145879576.1 6905817..6908249(+) (comA) [Pseudoduganella flava strain DSM 26639]
ATGCGCAGCTCCATCCTTGGTTTCGTCGCCGGCGCCGCGTTCCTGCAGACGCGCGCCGCGTTACCCGCCCATCCGTTGGC
CTGGCTGCTGGTACTGCTGGTGCTGGCCGCGCTGATCGGCTGGCGGTTTGATGTGCGCGGACGCTGCGCCGCATTGTTTG
CCTGCGGTGCCGGCATCGGCTGCATGTGGGCCGCGCTGGTGGCGGCCGATGCGCTGTCCGCCGGCCTGGCCAAGGCGGAC
GAGGGCCGCGACGTGGTCGTCGTCGGCACCATCGCCGACCTGCCGGTGGCGAACAGCCAGTTCACCCGCTTCCAGCTGGA
CGTCGAACAGGCCGACGGCATCGTCGTGCCGCCGCGCGTCGCGCTGTCCTGGTACGGCAACCTGCGCGGGCAGGAAGCGC
CCGTGCCCGCGCTGCGGCCGGGCGAGCGCTGGCGCCTGAAGGTGCGGCTGCAGCGGCCGCACGGCAATGCGAATCCGCAC
GGCTTCGATTACGAGCTGTGGCTGCTGGAACAGCGCATCCGCGCCACCGGCTACGTGCGGCCGGATGGACCGCAGCAGCG
TCTGAATACCTTCGTGTTCACGTTGCCGCATGCGGTGGAGCGCCTGCGCTGGCTGCTGCGCGCGCGCATCGAGCGCGCCT
TGGTCGGGCGGGAGTACGCGGGAGTGATCGTCGCGCTGGTGGTCGGCGACCAGCGCGACATCGACCAGTCGGACTGGCAG
GTGTTCAACCGCACCGGCATCAGCCACCTCGTGTCGATTTCCGGCCTGCACATCACAATGATCGCCGGGCTGGCCGCATG
GCTGATGTCCGCCCTGTGGCGCCGCTCGTTCTTCGTGCGCGGCGTCCGGCTGCCGCTGCGGCTGCCCGCGCAGAAGGCGG
CGGCGCTGGCCGGCATGCTGGCGGCGTTCGGCTACGTGCTGCTGGCCGGCTTCGGCGTGCCGGCGCAGCGCACCCTGTAC
ATGCTGGCCGTCGTCGCGCTGGCCGTGTGGACGGACCGGGCCACCAGCGTATCGCACGTGCTGGCGCTGGCGGCCGGCAT
CGTCGTGCTGCTTGATCCGTGGGCCGTGATGTGGCCGGGCTTCTGGCTGTCGTTCGGCGCCGTGGGCGCGATCCTGTATG
CGTCAGTGGGCCGTACGCAGATCGTCAAGAACCCCGGCAATCCGGATGCGGCGGACGAGGACGAGCGACGCGGCAAGCCG
CTCACCCGTCGGCAGCGCGGCATGCGCGCACTACAGGCGGCGGTCGGCACGCAGTACGCGGTGACGCTGGGCCTCGTGCC
GCTGACGCTGCTGCTGTTCGCGCAGGTGTCGCTCGTCAGCCCGCTGGCGAACGCGATTGCGATTCCGGTGGTCAGCTTTG
TCGTCACGCCGCTGGCGCTGGCTGGCGGCGTGCTGCCCGATCCGTTCTCAAGCCCGCTGCTGGTAGCGGCCCATGAAACG
ATGCGCGCGCTGGCCGTGCTGCTGCGATGGTGCAGCACCGCGCCGCTCGCCGTGTGGCAGGCGCCGGCGCCGCCGTGGTG
GCTGTTCGCGTTTGCGCTGGCCGGCACGGCGTGGCTGCTGGCGCCGCGCGGCTGGCCCGTGCGCTGGCTGGGCGTGTTCA
CGTGGGTGCCCTTGCTGACGGCGCCCGCGGACGCGCCGCGGCCCGGCACCTTGCGCATCACCGCGCTCGACGTGGGGCAG
GGCATGGCCGTGCTGGTCGAGACGGCCGGTCACCGGCTGCTGTACGACACGGGACCCGCGTATGGCCCGGAGGCGGATGC
GGGCGGGCGCGTGATCGTGCCTTACCTGCGCGCACGGGGCATCGGCCGGCTCGATGGCCTCGTCGTCAGCCATGCGGATG
CCGACCATGCGGGCGGCGCGCTGACGTTGCTGGCGAATACGCGGGTGAACTGGGTCCTGTCGTCGCTGGGCCCCGGCCAC
CGGATCGCCCGCGCCGCCGCGTCGCACGCGCATTGCGTGGCGGGCCAGCACTGGGAATGGGATGGTGTACGTTTCGAGAT
GCTGCACCCGGGTGCGGCCAGCTATGCCGACGCGGGCCTGAAGACCAACGCGCGCAGCTGCACGTTGCGCATCGCGGCAC
CCGGCGGCACGGTACTGCTGCCCGGCGATATCGAGGCGGCGCAGGAAGCCGAACTGGTGGCGCGTCATGGTGACGGCTTG
CGCGCGGATGTGCTGCTGGCGCCGCACCATGGCAGTGGCACGTCGTCGACGCCGGCCTTCCTGGCCGCCGTACGGCCACG
CATCGCGATCTTCCAGGTGGGATATCGTAACCGGTATCGGCATCCAAAAGGCGAGGTGTACGCGCGCTATGGCAGCATCG
GCGCGCAGCGGTTGCGCACGGATGGCGCGGGCGCCGTGGAGGTGGAGCTGGGCGCCGACATCACGGCGACCGCGTACCGC
ACAGTCCATCCGCGCTACTGGTATGACCGCTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (557-748)

• Domain of unknown function (DUF4131) (DUF4131) (27-181)

• Competence protein (Competence) (226-524)

3D structure

• AlphaFold DB: A0A562PI05

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	49.765	100	0.522
comA	Pseudomonas stutzeri DSM 10701	36.869	97.778	0.36